Cluster: MGYG000002993_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002993
- CGC Family ID: CGCFAM_10181
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002993_13 | MGYG000002993_13_43 | 50852 | 52165 | + | GH4 |
| TF | MGYG000002993_13 | MGYG000002993_13_44 | 52170 | 53009 | - | HTH_AraC | HTH_AraC |
| STP | MGYG000002993_13 | MGYG000002993_13_45 | 53213 | 54583 | + | SBP_bac_1 |
| TC | MGYG000002993_13 | MGYG000002993_13_46 | 54760 | 55608 | + | 3.A.1.1.7 |
| TC | MGYG000002993_13 | MGYG000002993_13_47 | 55608 | 56459 | + | 3.A.1.1.42 |
| pfam | MGYG000002993_13 | MGYG000002993_13_48 | 56485 | 57543 | + | Ldh_2 |
| pfam | MGYG000002993_13 | MGYG000002993_13_49 | 57557 | 58222 | + | Aldolase |
| TC | MGYG000002993_13 | MGYG000002993_13_50 | 58237 | 59085 | + | 8.A.5.1.4 |
Gene ID: MGYG000002993_13_43
Type: CAZyme
Location: 50852 - 52165 (+)
Type: CAZyme
Location: 50852 - 52165 (+)
Gene ID: MGYG000002993_13_44
Type: TF
Location: 52170 - 53009 (-)
Type: TF
Location: 52170 - 53009 (-)
Gene ID: MGYG000002993_13_45
Type: STP
Location: 53213 - 54583 (+)
Type: STP
Location: 53213 - 54583 (+)
Gene ID: MGYG000002993_13_46
Type: TC
Location: 54760 - 55608 (+)
Type: TC
Location: 54760 - 55608 (+)
Gene ID: MGYG000002993_13_47
Type: TC
Location: 55608 - 56459 (+)
Type: TC
Location: 55608 - 56459 (+)
Gene ID: MGYG000002993_13_48
Type: pfam
Location: 56485 - 57543 (+)
Type: pfam
Location: 56485 - 57543 (+)
Gene ID: MGYG000002993_13_49
Type: pfam
Location: 57557 - 58222 (+)
Type: pfam
Location: 57557 - 58222 (+)
Gene ID: MGYG000002993_13_50
Type: TC
Location: 58237 - 59085 (+)
Type: TC
Location: 58237 - 59085 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp000432135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002993_13_43 | vegetarian > vegan | 1.53359 | 0.00038 |
| MGYG000002993_13_44 | vegetarian > vegan | 1.52514 | 0.00038 |
| MGYG000002993_13_45 | vegetarian > vegan | 1.63391 | 0.00038 |
| MGYG000002993_13_46 | vegetarian > vegan | 1.77123 | 0.00038 |
| MGYG000002993_13_47 | vegetarian > vegan | 1.93056 | 0.00038 |
| MGYG000002993_13_48 | vegetarian > vegan | 1.23433 | 0.00038 |
| MGYG000002993_13_50 | vegetarian > vegan | 1.01442 | 0.00038 |