Cluster: MGYG000002991_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002991
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002991_3 | MGYG000002991_3_68 | 76211 | 77380 | - | CE9 |
| STP | MGYG000002991_3 | MGYG000002991_3_69 | 77498 | 78664 | - | SIS | SIS |
| TF | MGYG000002991_3 | MGYG000002991_3_70 | 78779 | 79510 | - | GntR |
| TC | MGYG000002991_3 | MGYG000002991_3_71 | 79696 | 80778 | - | 4.A.6.1.4 |
| TC | MGYG000002991_3 | MGYG000002991_3_72 | 80768 | 81568 | - | 4.A.6.1.4 |
| TC | MGYG000002991_3 | MGYG000002991_3_73 | 81659 | 82141 | - | 4.A.6.1.4 |
| pfam | MGYG000002991_3 | MGYG000002991_3_74 | 82178 | 82459 | - | YajC |
| TC | MGYG000002991_3 | MGYG000002991_3_75 | 82459 | 82902 | - | 4.A.6.1.16 |
Gene ID: MGYG000002991_3_68
Type: CAZyme
Location: 76211 - 77380 (-)
Type: CAZyme
Location: 76211 - 77380 (-)
Gene ID: MGYG000002991_3_69
Type: STP
Location: 77498 - 78664 (-)
Type: STP
Location: 77498 - 78664 (-)
Gene ID: MGYG000002991_3_70
Type: TF
Location: 78779 - 79510 (-)
Type: TF
Location: 78779 - 79510 (-)
Gene ID: MGYG000002991_3_71
Type: TC
Location: 79696 - 80778 (-)
Type: TC
Location: 79696 - 80778 (-)
Gene ID: MGYG000002991_3_72
Type: TC
Location: 80768 - 81568 (-)
Type: TC
Location: 80768 - 81568 (-)
Gene ID: MGYG000002991_3_73
Type: TC
Location: 81659 - 82141 (-)
Type: TC
Location: 81659 - 82141 (-)
Gene ID: MGYG000002991_3_74
Type: pfam
Location: 82178 - 82459 (-)
Type: pfam
Location: 82178 - 82459 (-)
Gene ID: MGYG000002991_3_75
Type: TC
Location: 82459 - 82902 (-)
Type: TC
Location: 82459 - 82902 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002991_3_74 | vegan > omnivore | 1.07453 | 0.00566 |