Cluster: MGYG000002972_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002972
- CGC Family ID: CGCFAM_00272
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002972_13 | MGYG000002972_13_18 | 20794 | 21663 | + | 3.A.1.132.3 |
| STP | MGYG000002972_13 | MGYG000002972_13_19 | 21766 | 23148 | + | Pyr_redox_2 |
| STP | MGYG000002972_13 | MGYG000002972_13_20 | 23151 | 24905 | + | Pyr_redox_2 |
| TC | MGYG000002972_13 | MGYG000002972_13_21 | 24960 | 25250 | - | 4.A.5.1.6 |
| TF | MGYG000002972_13 | MGYG000002972_13_22 | 25353 | 26000 | - | GntR |
| pfam | MGYG000002972_13 | MGYG000002972_13_23 | 26384 | 28612 | - | DEAD | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| CAZyme | MGYG000002972_13 | MGYG000002972_13_24 | 28623 | 29210 | - | GH23 |
Gene ID: MGYG000002972_13_18
Type: TC
Location: 20794 - 21663 (+)
Type: TC
Location: 20794 - 21663 (+)
Gene ID: MGYG000002972_13_19
Type: STP
Location: 21766 - 23148 (+)
Type: STP
Location: 21766 - 23148 (+)
Gene ID: MGYG000002972_13_20
Type: STP
Location: 23151 - 24905 (+)
Type: STP
Location: 23151 - 24905 (+)
Gene ID: MGYG000002972_13_21
Type: TC
Location: 24960 - 25250 (-)
Type: TC
Location: 24960 - 25250 (-)
Gene ID: MGYG000002972_13_22
Type: TF
Location: 25353 - 26000 (-)
Type: TF
Location: 25353 - 26000 (-)
Gene ID: MGYG000002972_13_23
Type: pfam
Location: 26384 - 28612 (-)
Type: pfam
Location: 26384 - 28612 (-)
Gene ID: MGYG000002972_13_24
Type: CAZyme
Location: 28623 - 29210 (-)
Type: CAZyme
Location: 28623 - 29210 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Fannyhessea
Species
Fannyhessea vaginae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.