Cluster: MGYG000002958_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002958
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002958_3 | MGYG000002958_3_15 | 15710 | 17194 | + | 4.A.1.1.7 |
| TF | MGYG000002958_3 | MGYG000002958_3_16 | 17427 | 18158 | + | GntR |
| CAZyme | MGYG000002958_3 | MGYG000002958_3_17 | 18302 | 19471 | + | CE9 |
| pfam | MGYG000002958_3 | MGYG000002958_3_18 | 19505 | 19978 | + | DUF386 |
| CAZyme | MGYG000002958_3 | MGYG000002958_3_19 | 20464 | 22260 | + | GH35 |
| TC | MGYG000002958_3 | MGYG000002958_3_20 | 22263 | 22727 | + | 4.A.6.1.18 |
| TC | MGYG000002958_3 | MGYG000002958_3_21 | 22821 | 23708 | + | 4.A.6.1.18 |
| TC | MGYG000002958_3 | MGYG000002958_3_22 | 23698 | 24537 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000002958_3 | MGYG000002958_3_23 | 24726 | 25349 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002958_3 | MGYG000002958_3_24 | 25431 | 25859 | + | 4.A.6.1.8 |
| TF | MGYG000002958_3 | MGYG000002958_3_25 | 25947 | 26681 | + | GntR |
| STP | MGYG000002958_3 | MGYG000002958_3_26 | 26793 | 27959 | + | SIS | SIS |
| CAZyme | MGYG000002958_3 | MGYG000002958_3_27 | 28076 | 29245 | + | CE9 |
Gene ID: MGYG000002958_3_15
Type: TC
Location: 15710 - 17194 (+)
Type: TC
Location: 15710 - 17194 (+)
Gene ID: MGYG000002958_3_16
Type: TF
Location: 17427 - 18158 (+)
Type: TF
Location: 17427 - 18158 (+)
Gene ID: MGYG000002958_3_17
Type: CAZyme
Location: 18302 - 19471 (+)
Type: CAZyme
Location: 18302 - 19471 (+)
Gene ID: MGYG000002958_3_18
Type: pfam
Location: 19505 - 19978 (+)
Type: pfam
Location: 19505 - 19978 (+)
Gene ID: MGYG000002958_3_19
Type: CAZyme
Location: 20464 - 22260 (+)
Type: CAZyme
Location: 20464 - 22260 (+)
Gene ID: MGYG000002958_3_20
Type: TC
Location: 22263 - 22727 (+)
Type: TC
Location: 22263 - 22727 (+)
Gene ID: MGYG000002958_3_21
Type: TC
Location: 22821 - 23708 (+)
Type: TC
Location: 22821 - 23708 (+)
Gene ID: MGYG000002958_3_22
Type: TC
Location: 23698 - 24537 (+)
Type: TC
Location: 23698 - 24537 (+)
Gene ID: MGYG000002958_3_23
Type:
Location: 24726 - 25349 (+)
Type:
Location: 24726 - 25349 (+)
Gene ID: MGYG000002958_3_24
Type: TC
Location: 25431 - 25859 (+)
Type: TC
Location: 25431 - 25859 (+)
Gene ID: MGYG000002958_3_25
Type: TF
Location: 25947 - 26681 (+)
Type: TF
Location: 25947 - 26681 (+)
Gene ID: MGYG000002958_3_26
Type: STP
Location: 26793 - 27959 (+)
Type: STP
Location: 26793 - 27959 (+)
Gene ID: MGYG000002958_3_27
Type: CAZyme
Location: 28076 - 29245 (+)
Type: CAZyme
Location: 28076 - 29245 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002958_3_16 | vegetarian > vegan | 3.38502 | 0.02517 |
| MGYG000002958_3_19 | vegetarian > vegan | 2.75688 | 0.02517 |
| MGYG000002958_3_20 | vegetarian > vegan | 3.43030 | 0.02517 |
| MGYG000002958_3_22 | vegetarian > vegan | 2.52738 | 0.02517 |