Cluster: MGYG000002958_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002958
- CGC Family ID: CGCFAM_01001
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002958_17 | MGYG000002958_17_10 | 13555 | 15237 | + | 2.A.66.4.4 |
| pfam | MGYG000002958_17 | MGYG000002958_17_11 | 15244 | 17184 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | MGYG000002958_17 | MGYG000002958_17_12 | 17548 | 19161 | + | 3.A.1.5.38 |
| TC | MGYG000002958_17 | MGYG000002958_17_13 | 19319 | 20275 | + | 3.A.1.5.38 |
| TC | MGYG000002958_17 | MGYG000002958_17_14 | 20279 | 22294 | + | 3.A.1.5.25 |
| TC | MGYG000002958_17 | MGYG000002958_17_15 | 22295 | 23122 | + | 3.A.1.5.27 |
| CAZyme | MGYG000002958_17 | MGYG000002958_17_16 | 23254 | 24180 | + | CE7 |
Gene ID: MGYG000002958_17_10
Type: TC
Location: 13555 - 15237 (+)
Type: TC
Location: 13555 - 15237 (+)
Gene ID: MGYG000002958_17_11
Type: pfam
Location: 15244 - 17184 (+)
Type: pfam
Location: 15244 - 17184 (+)
Gene ID: MGYG000002958_17_12
Type: TC
Location: 17548 - 19161 (+)
Type: TC
Location: 17548 - 19161 (+)
Gene ID: MGYG000002958_17_13
Type: TC
Location: 19319 - 20275 (+)
Type: TC
Location: 19319 - 20275 (+)
Gene ID: MGYG000002958_17_14
Type: TC
Location: 20279 - 22294 (+)
Type: TC
Location: 20279 - 22294 (+)
Gene ID: MGYG000002958_17_15
Type: TC
Location: 22295 - 23122 (+)
Type: TC
Location: 22295 - 23122 (+)
Gene ID: MGYG000002958_17_16
Type: CAZyme
Location: 23254 - 24180 (+)
Type: CAZyme
Location: 23254 - 24180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541795
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.