Cluster: MGYG000002948_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002948
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002948_11 | MGYG000002948_11_28 | 28964 | 30451 | + | 4.A.1.1.7 |
| TF | MGYG000002948_11 | MGYG000002948_11_29 | 30684 | 31415 | + | GntR |
| CAZyme | MGYG000002948_11 | MGYG000002948_11_30 | 31559 | 32728 | + | CE9 |
| pfam | MGYG000002948_11 | MGYG000002948_11_31 | 32761 | 33234 | + | DUF386 |
| CAZyme | MGYG000002948_11 | MGYG000002948_11_32 | 33719 | 35515 | + | GH35 |
| TC | MGYG000002948_11 | MGYG000002948_11_33 | 35518 | 35982 | + | 4.A.6.1.18 |
| TC | MGYG000002948_11 | MGYG000002948_11_34 | 36076 | 36963 | + | 4.A.6.1.18 |
| TC | MGYG000002948_11 | MGYG000002948_11_35 | 36953 | 37792 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000002948_11 | MGYG000002948_11_36 | 37981 | 38604 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002948_11 | MGYG000002948_11_37 | 38686 | 39114 | + | 4.A.6.1.8 |
| TF | MGYG000002948_11 | MGYG000002948_11_38 | 39202 | 39936 | + | GntR |
| STP | MGYG000002948_11 | MGYG000002948_11_39 | 40048 | 41214 | + | SIS | SIS |
| CAZyme | MGYG000002948_11 | MGYG000002948_11_40 | 41332 | 42501 | + | CE9 |
Gene ID: MGYG000002948_11_28
Type: TC
Location: 28964 - 30451 (+)
Type: TC
Location: 28964 - 30451 (+)
Gene ID: MGYG000002948_11_29
Type: TF
Location: 30684 - 31415 (+)
Type: TF
Location: 30684 - 31415 (+)
Gene ID: MGYG000002948_11_30
Type: CAZyme
Location: 31559 - 32728 (+)
Type: CAZyme
Location: 31559 - 32728 (+)
Gene ID: MGYG000002948_11_31
Type: pfam
Location: 32761 - 33234 (+)
Type: pfam
Location: 32761 - 33234 (+)
Gene ID: MGYG000002948_11_32
Type: CAZyme
Location: 33719 - 35515 (+)
Type: CAZyme
Location: 33719 - 35515 (+)
Gene ID: MGYG000002948_11_33
Type: TC
Location: 35518 - 35982 (+)
Type: TC
Location: 35518 - 35982 (+)
Gene ID: MGYG000002948_11_34
Type: TC
Location: 36076 - 36963 (+)
Type: TC
Location: 36076 - 36963 (+)
Gene ID: MGYG000002948_11_35
Type: TC
Location: 36953 - 37792 (+)
Type: TC
Location: 36953 - 37792 (+)
Gene ID: MGYG000002948_11_36
Type:
Location: 37981 - 38604 (+)
Type:
Location: 37981 - 38604 (+)
Gene ID: MGYG000002948_11_37
Type: TC
Location: 38686 - 39114 (+)
Type: TC
Location: 38686 - 39114 (+)
Gene ID: MGYG000002948_11_38
Type: TF
Location: 39202 - 39936 (+)
Type: TF
Location: 39202 - 39936 (+)
Gene ID: MGYG000002948_11_39
Type: STP
Location: 40048 - 41214 (+)
Type: STP
Location: 40048 - 41214 (+)
Gene ID: MGYG000002948_11_40
Type: CAZyme
Location: 41332 - 42501 (+)
Type: CAZyme
Location: 41332 - 42501 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002948_11_29 | vegetarian > vegan | 3.14415 | 0.02517 |
| MGYG000002948_11_32 | vegetarian > vegan | 2.71808 | 0.02517 |
| MGYG000002948_11_33 | vegetarian > vegan | 3.34732 | 0.02517 |
| MGYG000002948_11_34 | vegetarian > vegan | 2.45628 | 0.02517 |
| MGYG000002948_11_35 | vegetarian > vegan | 2.45587 | 0.02517 |