Cluster: MGYG000002948_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002948
- CGC Family ID: CGCFAM_00019
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002948_1 | MGYG000002948_1_96 | 123213 | 124592 | - | 3.A.1.17.6 |
| NULL(UNKNOWN) | MGYG000002948_1 | MGYG000002948_1_97 | 124596 | 125651 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002948_1 | MGYG000002948_1_98 | 125654 | 127465 | - | 3.D.1.5.1 |
| STP | MGYG000002948_1 | MGYG000002948_1_99 | 127459 | 129291 | - | Pyr_redox_2 |
| CAZyme | MGYG000002948_1 | MGYG000002948_1_100 | 129548 | 130930 | - | GH4 |
| TC | MGYG000002948_1 | MGYG000002948_1_101 | 130934 | 132550 | - | 4.A.1.1.3 |
| pfam | MGYG000002948_1 | MGYG000002948_1_102 | 132650 | 133516 | - | PRD | PRD | CAT_RBD |
| TC | MGYG000002948_1 | MGYG000002948_1_103 | 133523 | 134035 | - | 4.A.1.2.5 |
| STP | MGYG000002948_1 | MGYG000002948_1_104 | 134380 | 135141 | - | Fer4 |
| TC | MGYG000002948_1 | MGYG000002948_1_105 | 135762 | 138005 | - | 1.I.1.1.3 |
| STP | MGYG000002948_1 | MGYG000002948_1_106 | 138596 | 139558 | + | FHA |
| STP | MGYG000002948_1 | MGYG000002948_1_107 | 139730 | 141814 | + | Pkinase |
| TC | MGYG000002948_1 | MGYG000002948_1_108 | 142066 | 144405 | + | 3.A.3.5.15 |
Gene ID: MGYG000002948_1_96
Type: TC
Location: 123213 - 124592 (-)
Type: TC
Location: 123213 - 124592 (-)
Gene ID: MGYG000002948_1_97
Type:
Location: 124596 - 125651 (-)
Type:
Location: 124596 - 125651 (-)
Gene ID: MGYG000002948_1_98
Type: TC
Location: 125654 - 127465 (-)
Type: TC
Location: 125654 - 127465 (-)
Gene ID: MGYG000002948_1_99
Type: STP
Location: 127459 - 129291 (-)
Type: STP
Location: 127459 - 129291 (-)
Gene ID: MGYG000002948_1_100
Type: CAZyme
Location: 129548 - 130930 (-)
Type: CAZyme
Location: 129548 - 130930 (-)
Gene ID: MGYG000002948_1_101
Type: TC
Location: 130934 - 132550 (-)
Type: TC
Location: 130934 - 132550 (-)
Gene ID: MGYG000002948_1_102
Type: pfam
Location: 132650 - 133516 (-)
Type: pfam
Location: 132650 - 133516 (-)
Gene ID: MGYG000002948_1_103
Type: TC
Location: 133523 - 134035 (-)
Type: TC
Location: 133523 - 134035 (-)
Gene ID: MGYG000002948_1_104
Type: STP
Location: 134380 - 135141 (-)
Type: STP
Location: 134380 - 135141 (-)
Gene ID: MGYG000002948_1_105
Type: TC
Location: 135762 - 138005 (-)
Type: TC
Location: 135762 - 138005 (-)
Gene ID: MGYG000002948_1_106
Type: STP
Location: 138596 - 139558 (+)
Type: STP
Location: 138596 - 139558 (+)
Gene ID: MGYG000002948_1_107
Type: STP
Location: 139730 - 141814 (+)
Type: STP
Location: 139730 - 141814 (+)
Gene ID: MGYG000002948_1_108
Type: TC
Location: 142066 - 144405 (+)
Type: TC
Location: 142066 - 144405 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002948_1_97 | vegan > omnivore | 1.07698 | 0.02258 |
| MGYG000002948_1_98 | vegan > omnivore | 1.04096 | 0.02258 |