Cluster: MGYG000002947_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002947
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002947_35 | MGYG000002947_35_12 | 14448 | 15215 | - | 3.A.1.103.1 |
| TC | MGYG000002947_35 | MGYG000002947_35_13 | 15228 | 16073 | - | 3.A.1.103.6 |
| CAZyme | MGYG000002947_35 | MGYG000002947_35_14 | 16235 | 17164 | + | GT81 |
| CAZyme | MGYG000002947_35 | MGYG000002947_35_15 | 17196 | 19037 | - | GT2 |
| pfam | MGYG000002947_35 | MGYG000002947_35_16 | 19070 | 20257 | - | LicD |
| CAZyme | MGYG000002947_35 | MGYG000002947_35_17 | 20357 | 22192 | - | GT2 |
Gene ID: MGYG000002947_35_12
Type: TC
Location: 14448 - 15215 (-)
Type: TC
Location: 14448 - 15215 (-)
Gene ID: MGYG000002947_35_13
Type: TC
Location: 15228 - 16073 (-)
Type: TC
Location: 15228 - 16073 (-)
Gene ID: MGYG000002947_35_14
Type: CAZyme
Location: 16235 - 17164 (+)
Type: CAZyme
Location: 16235 - 17164 (+)
Gene ID: MGYG000002947_35_15
Type: CAZyme
Location: 17196 - 19037 (-)
Type: CAZyme
Location: 17196 - 19037 (-)
Gene ID: MGYG000002947_35_16
Type: pfam
Location: 19070 - 20257 (-)
Type: pfam
Location: 19070 - 20257 (-)
Gene ID: MGYG000002947_35_17
Type: CAZyme
Location: 20357 - 22192 (-)
Type: CAZyme
Location: 20357 - 22192 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900539735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002947_35_13 | vegan > omnivore | 2.11981 | 0.01332 |
| MGYG000002947_35_14 | vegan > omnivore | 1.68219 | 0.01332 |
| MGYG000002947_35_15 | vegan > omnivore | 17.60275 | 0.01332 |
| MGYG000002947_35_15 | vegetarian > omnivore | 12.92959 | 0.01971 |
| MGYG000002947_35_16 | vegan > omnivore | 17.84047 | 0.01332 |
| MGYG000002947_35_17 | vegan > omnivore | 10.24178 | 0.01332 |