Cluster: MGYG000002932_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: MGYG000002932
- CGC Family ID: CGCFAM_00243
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002932_7 | MGYG000002932_7_46 | 51246 | 52079 | + | 4.A.1.1.2 |
| TF | MGYG000002932_7 | MGYG000002932_7_47 | 52312 | 53043 | + | GntR |
| CAZyme | MGYG000002932_7 | MGYG000002932_7_48 | 53187 | 54356 | + | CE9 |
| pfam | MGYG000002932_7 | MGYG000002932_7_49 | 54389 | 54862 | + | DUF386 |
| CAZyme | MGYG000002932_7 | MGYG000002932_7_50 | 55347 | 57143 | + | GH35 |
| TC | MGYG000002932_7 | MGYG000002932_7_51 | 57146 | 57610 | + | 4.A.6.1.18 |
| TC | MGYG000002932_7 | MGYG000002932_7_52 | 57704 | 58591 | + | 4.A.6.1.18 |
| TC | MGYG000002932_7 | MGYG000002932_7_53 | 58581 | 59420 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000002932_7 | MGYG000002932_7_54 | 59608 | 60231 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002932_7 | MGYG000002932_7_55 | 60313 | 60741 | + | 4.A.6.1.8 |
| TF | MGYG000002932_7 | MGYG000002932_7_56 | 60829 | 61563 | + | GntR |
| STP | MGYG000002932_7 | MGYG000002932_7_57 | 61675 | 62841 | + | SIS | SIS |
| CAZyme | MGYG000002932_7 | MGYG000002932_7_58 | 62958 | 64127 | + | CE9 |
Gene ID: MGYG000002932_7_46
Type: TC
Location: 51246 - 52079 (+)
Type: TC
Location: 51246 - 52079 (+)
Gene ID: MGYG000002932_7_47
Type: TF
Location: 52312 - 53043 (+)
Type: TF
Location: 52312 - 53043 (+)
Gene ID: MGYG000002932_7_48
Type: CAZyme
Location: 53187 - 54356 (+)
Type: CAZyme
Location: 53187 - 54356 (+)
Gene ID: MGYG000002932_7_49
Type: pfam
Location: 54389 - 54862 (+)
Type: pfam
Location: 54389 - 54862 (+)
Gene ID: MGYG000002932_7_50
Type: CAZyme
Location: 55347 - 57143 (+)
Type: CAZyme
Location: 55347 - 57143 (+)
Gene ID: MGYG000002932_7_51
Type: TC
Location: 57146 - 57610 (+)
Type: TC
Location: 57146 - 57610 (+)
Gene ID: MGYG000002932_7_52
Type: TC
Location: 57704 - 58591 (+)
Type: TC
Location: 57704 - 58591 (+)
Gene ID: MGYG000002932_7_53
Type: TC
Location: 58581 - 59420 (+)
Type: TC
Location: 58581 - 59420 (+)
Gene ID: MGYG000002932_7_54
Type:
Location: 59608 - 60231 (+)
Type:
Location: 59608 - 60231 (+)
Gene ID: MGYG000002932_7_55
Type: TC
Location: 60313 - 60741 (+)
Type: TC
Location: 60313 - 60741 (+)
Gene ID: MGYG000002932_7_56
Type: TF
Location: 60829 - 61563 (+)
Type: TF
Location: 60829 - 61563 (+)
Gene ID: MGYG000002932_7_57
Type: STP
Location: 61675 - 62841 (+)
Type: STP
Location: 61675 - 62841 (+)
Gene ID: MGYG000002932_7_58
Type: CAZyme
Location: 62958 - 64127 (+)
Type: CAZyme
Location: 62958 - 64127 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002932_7_47 | vegetarian > vegan | 3.19646 | 0.02258 |
| MGYG000002932_7_50 | vegetarian > vegan | 2.75590 | 0.02258 |
| MGYG000002932_7_51 | vegetarian > vegan | 3.37946 | 0.02258 |
| MGYG000002932_7_53 | vegetarian > vegan | 2.51285 | 0.02258 |