Cluster: MGYG000002919_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002919
- CGC Family ID: CGCFAM_00019
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002919_6 | MGYG000002919_6_34 | 39485 | 41827 | - | 3.A.3.5.15 |
| STP | MGYG000002919_6 | MGYG000002919_6_35 | 42241 | 44325 | - | Pkinase |
| STP | MGYG000002919_6 | MGYG000002919_6_36 | 44497 | 45459 | - | FHA |
| TC | MGYG000002919_6 | MGYG000002919_6_37 | 45967 | 48135 | + | 1.I.1.1.3 |
| TC | MGYG000002919_6 | MGYG000002919_6_38 | 48592 | 49104 | + | 4.A.1.2.5 |
| pfam | MGYG000002919_6 | MGYG000002919_6_39 | 49111 | 49977 | + | PRD | PRD | CAT_RBD |
| TC | MGYG000002919_6 | MGYG000002919_6_40 | 50077 | 51693 | + | 4.A.1.1.3 |
| CAZyme | MGYG000002919_6 | MGYG000002919_6_41 | 51697 | 53079 | + | GH4 |
| STP | MGYG000002919_6 | MGYG000002919_6_42 | 53336 | 55168 | + | Pyr_redox_2 |
| TC | MGYG000002919_6 | MGYG000002919_6_43 | 55162 | 56973 | + | 3.D.1.5.1 |
| NULL(UNKNOWN) | MGYG000002919_6 | MGYG000002919_6_44 | 56976 | 58031 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002919_6 | MGYG000002919_6_45 | 58035 | 59411 | + | 3.A.1.125.5 |
Gene ID: MGYG000002919_6_34
Type: TC
Location: 39485 - 41827 (-)
Type: TC
Location: 39485 - 41827 (-)
Gene ID: MGYG000002919_6_35
Type: STP
Location: 42241 - 44325 (-)
Type: STP
Location: 42241 - 44325 (-)
Gene ID: MGYG000002919_6_36
Type: STP
Location: 44497 - 45459 (-)
Type: STP
Location: 44497 - 45459 (-)
Gene ID: MGYG000002919_6_37
Type: TC
Location: 45967 - 48135 (+)
Type: TC
Location: 45967 - 48135 (+)
Gene ID: MGYG000002919_6_38
Type: TC
Location: 48592 - 49104 (+)
Type: TC
Location: 48592 - 49104 (+)
Gene ID: MGYG000002919_6_39
Type: pfam
Location: 49111 - 49977 (+)
Type: pfam
Location: 49111 - 49977 (+)
Gene ID: MGYG000002919_6_40
Type: TC
Location: 50077 - 51693 (+)
Type: TC
Location: 50077 - 51693 (+)
Gene ID: MGYG000002919_6_41
Type: CAZyme
Location: 51697 - 53079 (+)
Type: CAZyme
Location: 51697 - 53079 (+)
Gene ID: MGYG000002919_6_42
Type: STP
Location: 53336 - 55168 (+)
Type: STP
Location: 53336 - 55168 (+)
Gene ID: MGYG000002919_6_43
Type: TC
Location: 55162 - 56973 (+)
Type: TC
Location: 55162 - 56973 (+)
Gene ID: MGYG000002919_6_44
Type:
Location: 56976 - 58031 (+)
Type:
Location: 56976 - 58031 (+)
Gene ID: MGYG000002919_6_45
Type: TC
Location: 58035 - 59411 (+)
Type: TC
Location: 58035 - 59411 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.