Cluster: MGYG000002918_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002918
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002918_4 | MGYG000002918_4_42 | 40345 | 41766 | - | GH1 |
| TC | MGYG000002918_4 | MGYG000002918_4_43 | 41842 | 43620 | - | 4.A.3.1.1 |
| TF | MGYG000002918_4 | MGYG000002918_4_44 | 43897 | 44907 | + | LacI |
| CAZyme | MGYG000002918_4 | MGYG000002918_4_45 | 45173 | 46612 | - | GH1 |
| TC | MGYG000002918_4 | MGYG000002918_4_46 | 46679 | 48454 | - | 4.A.3.1.1 |
| TF | MGYG000002918_4 | MGYG000002918_4_47 | 48812 | 49816 | + | LacI |
| TC | MGYG000002918_4 | MGYG000002918_4_48 | 50038 | 50376 | + | 4.A.3.1.2 |
Gene ID: MGYG000002918_4_42
Type: CAZyme
Location: 40345 - 41766 (-)
Type: CAZyme
Location: 40345 - 41766 (-)
Gene ID: MGYG000002918_4_43
Type: TC
Location: 41842 - 43620 (-)
Type: TC
Location: 41842 - 43620 (-)
Gene ID: MGYG000002918_4_44
Type: TF
Location: 43897 - 44907 (+)
Type: TF
Location: 43897 - 44907 (+)
Gene ID: MGYG000002918_4_45
Type: CAZyme
Location: 45173 - 46612 (-)
Type: CAZyme
Location: 45173 - 46612 (-)
Gene ID: MGYG000002918_4_46
Type: TC
Location: 46679 - 48454 (-)
Type: TC
Location: 46679 - 48454 (-)
Gene ID: MGYG000002918_4_47
Type: TF
Location: 48812 - 49816 (+)
Type: TF
Location: 48812 - 49816 (+)
Gene ID: MGYG000002918_4_48
Type: TC
Location: 50038 - 50376 (+)
Type: TC
Location: 50038 - 50376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900547765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.