Cluster: MGYG000002917_CGC3
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000002917
- CGC Family ID: CGCFAM_00011
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002917_10 | MGYG000002917_10_5 | 5253 | 7244 | - | GT2 |
| CAZyme | MGYG000002917_10 | MGYG000002917_10_6 | 7440 | 8576 | + | GT2 |
| TC | MGYG000002917_10 | MGYG000002917_10_7 | 8734 | 9546 | + | 3.A.1.103.4 |
| TC | MGYG000002917_10 | MGYG000002917_10_8 | 9556 | 10311 | + | 3.A.1.103.1 |
| CAZyme | MGYG000002917_10 | MGYG000002917_10_9 | 10314 | 11570 | + | GT2 |
| CAZyme | MGYG000002917_10 | MGYG000002917_10_10 | 11610 | 12671 | + | GT2 |
| CAZyme | MGYG000002917_10 | MGYG000002917_10_11 | 12693 | 13928 | + | GT4 |
| NULL(UNKNOWN) | MGYG000002917_10 | MGYG000002917_10_12 | 13985 | 14173 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002917_10 | MGYG000002917_10_13 | 14265 | 15227 | - | GT81 |
Gene ID: MGYG000002917_10_5
Type: CAZyme
Location: 5253 - 7244 (-)
Type: CAZyme
Location: 5253 - 7244 (-)
Gene ID: MGYG000002917_10_6
Type: CAZyme
Location: 7440 - 8576 (+)
Type: CAZyme
Location: 7440 - 8576 (+)
Gene ID: MGYG000002917_10_7
Type: TC
Location: 8734 - 9546 (+)
Type: TC
Location: 8734 - 9546 (+)
Gene ID: MGYG000002917_10_8
Type: TC
Location: 9556 - 10311 (+)
Type: TC
Location: 9556 - 10311 (+)
Gene ID: MGYG000002917_10_9
Type: CAZyme
Location: 10314 - 11570 (+)
Type: CAZyme
Location: 10314 - 11570 (+)
Gene ID: MGYG000002917_10_10
Type: CAZyme
Location: 11610 - 12671 (+)
Type: CAZyme
Location: 11610 - 12671 (+)
Gene ID: MGYG000002917_10_11
Type: CAZyme
Location: 12693 - 13928 (+)
Type: CAZyme
Location: 12693 - 13928 (+)
Gene ID: MGYG000002917_10_12
Type:
Location: 13985 - 14173 (+)
Type:
Location: 13985 - 14173 (+)
Gene ID: MGYG000002917_10_13
Type: CAZyme
Location: 14265 - 15227 (-)
Type: CAZyme
Location: 14265 - 15227 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002917_10_6 | vegetarian > omnivore | 1.34511 | 0.04746 |
| MGYG000002917_10_6 | vegetarian > vegan | 2.38807 | 0.02792 |
| MGYG000002917_10_7 | vegetarian > vegan | 2.47553 | 0.02792 |
| MGYG000002917_10_8 | vegetarian > vegan | 2.17133 | 0.02792 |
| MGYG000002917_10_10 | vegetarian > omnivore | 2.14044 | 0.04746 |
| MGYG000002917_10_10 | vegetarian > vegan | 4.23353 | 0.02792 |
| MGYG000002917_10_11 | vegetarian > omnivore | 1.97754 | 0.04746 |
| MGYG000002917_10_11 | vegetarian > vegan | 3.70033 | 0.02792 |