Cluster: MGYG000002911_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 9
- Substrate:
- Genome ID: MGYG000002911
- CGC Family ID: CGCFAM_00018
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002911_6 | MGYG000002911_6_60 | 68039 | 69058 | - | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_61 | 69371 | 70474 | + | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_62 | 70481 | 71521 | + | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_63 | 71596 | 72714 | + | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_64 | 72727 | 73794 | + | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_65 | 73795 | 76281 | + | GT2 | GT2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_66 | 76784 | 79234 | + | GH73 |
| NULL(UNKNOWN) | MGYG000002911_6 | MGYG000002911_6_67 | 79402 | 80472 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002911_6 | MGYG000002911_6_68 | 80757 | 81779 | + | 9.B.18.2.1 |
| pfam | MGYG000002911_6 | MGYG000002911_6_69 | 81781 | 82998 | + | Epimerase | Polysacc_synt_C |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_70 | 83058 | 84122 | + | GT4 |
| pfam | MGYG000002911_6 | MGYG000002911_6_71 | 84143 | 85318 | + | Epimerase_2 |
| CAZyme | MGYG000002911_6 | MGYG000002911_6_72 | 86586 | 87296 | + | GT2 |
Gene ID: MGYG000002911_6_60
Type: CAZyme
Location: 68039 - 69058 (-)
Type: CAZyme
Location: 68039 - 69058 (-)
Gene ID: MGYG000002911_6_61
Type: CAZyme
Location: 69371 - 70474 (+)
Type: CAZyme
Location: 69371 - 70474 (+)
Gene ID: MGYG000002911_6_62
Type: CAZyme
Location: 70481 - 71521 (+)
Type: CAZyme
Location: 70481 - 71521 (+)
Gene ID: MGYG000002911_6_63
Type: CAZyme
Location: 71596 - 72714 (+)
Type: CAZyme
Location: 71596 - 72714 (+)
Gene ID: MGYG000002911_6_64
Type: CAZyme
Location: 72727 - 73794 (+)
Type: CAZyme
Location: 72727 - 73794 (+)
Gene ID: MGYG000002911_6_65
Type: CAZyme
Location: 73795 - 76281 (+)
Type: CAZyme
Location: 73795 - 76281 (+)
Gene ID: MGYG000002911_6_66
Type: CAZyme
Location: 76784 - 79234 (+)
Type: CAZyme
Location: 76784 - 79234 (+)
Gene ID: MGYG000002911_6_67
Type:
Location: 79402 - 80472 (+)
Type:
Location: 79402 - 80472 (+)
Gene ID: MGYG000002911_6_68
Type: TC
Location: 80757 - 81779 (+)
Type: TC
Location: 80757 - 81779 (+)
Gene ID: MGYG000002911_6_69
Type: pfam
Location: 81781 - 82998 (+)
Type: pfam
Location: 81781 - 82998 (+)
Gene ID: MGYG000002911_6_70
Type: CAZyme
Location: 83058 - 84122 (+)
Type: CAZyme
Location: 83058 - 84122 (+)
Gene ID: MGYG000002911_6_71
Type: pfam
Location: 84143 - 85318 (+)
Type: pfam
Location: 84143 - 85318 (+)
Gene ID: MGYG000002911_6_72
Type: CAZyme
Location: 86586 - 87296 (+)
Type: CAZyme
Location: 86586 - 87296 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002911_6_66 | vegan > omnivore | 1.65409 | 0.01560 |
| MGYG000002911_6_66 | vegetarian > omnivore | 2.32906 | 0.03698 |
| MGYG000002911_6_67 | vegan > omnivore | 1.30933 | 0.01560 |
| MGYG000002911_6_67 | vegetarian > omnivore | 2.13639 | 0.03698 |
| MGYG000002911_6_69 | vegetarian > omnivore | 1.58804 | 0.02242 |
| MGYG000002911_6_69 | vegetarian > vegan | 1.92374 | 0.00181 |
| MGYG000002911_6_70 | vegan > omnivore | 2.13268 | 0.01560 |
| MGYG000002911_6_70 | vegetarian > omnivore | 2.67755 | 0.02242 |
| MGYG000002911_6_72 | vegan > omnivore | 1.36814 | 0.01560 |
| MGYG000002911_6_72 | vegetarian > omnivore | 2.34423 | 0.02242 |