Cluster: MGYG000002911_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002911
- CGC Family ID: CGCFAM_00019
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002911_5 | MGYG000002911_5_72 | 97398 | 98780 | - | GH4 |
| TC | MGYG000002911_5 | MGYG000002911_5_73 | 98784 | 100400 | - | 4.A.1.1.3 |
| pfam | MGYG000002911_5 | MGYG000002911_5_74 | 100500 | 101030 | - | PRD | PRD |
| pfam | MGYG000002911_5 | MGYG000002911_5_75 | 100996 | 101397 | - | PRD | CAT_RBD |
| TC | MGYG000002911_5 | MGYG000002911_5_76 | 101404 | 101916 | - | 4.A.1.2.5 |
| TC | MGYG000002911_5 | MGYG000002911_5_77 | 102393 | 104642 | - | 1.I.1.1.3 |
| TC | MGYG000002911_5 | MGYG000002911_5_78 | 105203 | 107545 | + | 3.A.3.5.15 |
Gene ID: MGYG000002911_5_72
Type: CAZyme
Location: 97398 - 98780 (-)
Type: CAZyme
Location: 97398 - 98780 (-)
Gene ID: MGYG000002911_5_73
Type: TC
Location: 98784 - 100400 (-)
Type: TC
Location: 98784 - 100400 (-)
Gene ID: MGYG000002911_5_74
Type: pfam
Location: 100500 - 101030 (-)
Type: pfam
Location: 100500 - 101030 (-)
Gene ID: MGYG000002911_5_75
Type: pfam
Location: 100996 - 101397 (-)
Type: pfam
Location: 100996 - 101397 (-)
Gene ID: MGYG000002911_5_76
Type: TC
Location: 101404 - 101916 (-)
Type: TC
Location: 101404 - 101916 (-)
Gene ID: MGYG000002911_5_77
Type: TC
Location: 102393 - 104642 (-)
Type: TC
Location: 102393 - 104642 (-)
Gene ID: MGYG000002911_5_78
Type: TC
Location: 105203 - 107545 (+)
Type: TC
Location: 105203 - 107545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.