Cluster: MGYG000002911_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002911
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002911_19 | MGYG000002911_19_28 | 25353 | 26774 | - | GH1 |
| TC | MGYG000002911_19 | MGYG000002911_19_29 | 26850 | 28610 | - | 4.A.3.1.1 |
| TF | MGYG000002911_19 | MGYG000002911_19_30 | 28887 | 29897 | + | LacI |
| TC | MGYG000002911_19 | MGYG000002911_19_31 | 30311 | 32071 | - | 4.A.3.1.1 |
| CAZyme | MGYG000002911_19 | MGYG000002911_19_32 | 32248 | 33690 | - | GH1 |
| TF | MGYG000002911_19 | MGYG000002911_19_33 | 34032 | 35069 | + | LacI |
| CAZyme | MGYG000002911_19 | MGYG000002911_19_34 | 35351 | 36790 | - | GH1 |
| TC | MGYG000002911_19 | MGYG000002911_19_35 | 36857 | 38620 | - | 4.A.3.1.1 |
| TF | MGYG000002911_19 | MGYG000002911_19_36 | 38948 | 39982 | + | LacI |
| TC | MGYG000002911_19 | MGYG000002911_19_37 | 40197 | 40535 | + | 4.A.3.1.2 |
Gene ID: MGYG000002911_19_28
Type: CAZyme
Location: 25353 - 26774 (-)
Type: CAZyme
Location: 25353 - 26774 (-)
Gene ID: MGYG000002911_19_29
Type: TC
Location: 26850 - 28610 (-)
Type: TC
Location: 26850 - 28610 (-)
Gene ID: MGYG000002911_19_30
Type: TF
Location: 28887 - 29897 (+)
Type: TF
Location: 28887 - 29897 (+)
Gene ID: MGYG000002911_19_31
Type: TC
Location: 30311 - 32071 (-)
Type: TC
Location: 30311 - 32071 (-)
Gene ID: MGYG000002911_19_32
Type: CAZyme
Location: 32248 - 33690 (-)
Type: CAZyme
Location: 32248 - 33690 (-)
Gene ID: MGYG000002911_19_33
Type: TF
Location: 34032 - 35069 (+)
Type: TF
Location: 34032 - 35069 (+)
Gene ID: MGYG000002911_19_34
Type: CAZyme
Location: 35351 - 36790 (-)
Type: CAZyme
Location: 35351 - 36790 (-)
Gene ID: MGYG000002911_19_35
Type: TC
Location: 36857 - 38620 (-)
Type: TC
Location: 36857 - 38620 (-)
Gene ID: MGYG000002911_19_36
Type: TF
Location: 38948 - 39982 (+)
Type: TF
Location: 38948 - 39982 (+)
Gene ID: MGYG000002911_19_37
Type: TC
Location: 40197 - 40535 (+)
Type: TC
Location: 40197 - 40535 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.