Cluster: MGYG000002911_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000002911
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002911_15 | MGYG000002911_15_6 | 4740 | 5804 | - | GT2 |
| CAZyme | MGYG000002911_15 | MGYG000002911_15_7 | 5801 | 6838 | - | GT4 |
| CAZyme | MGYG000002911_15 | MGYG000002911_15_8 | 6838 | 7590 | - | GT32 |
| STP | MGYG000002911_15 | MGYG000002911_15_9 | 7613 | 8857 | - | Fer4 |
| pfam | MGYG000002911_15 | MGYG000002911_15_10 | 8866 | 10053 | - | PS_pyruv_trans |
| CAZyme | MGYG000002911_15 | MGYG000002911_15_11 | 10063 | 11166 | - | GT4 |
| TC | MGYG000002911_15 | MGYG000002911_15_12 | 11167 | 11922 | - | 9.B.18.1.2 |
Gene ID: MGYG000002911_15_6
Type: CAZyme
Location: 4740 - 5804 (-)
Type: CAZyme
Location: 4740 - 5804 (-)
Gene ID: MGYG000002911_15_7
Type: CAZyme
Location: 5801 - 6838 (-)
Type: CAZyme
Location: 5801 - 6838 (-)
Gene ID: MGYG000002911_15_8
Type: CAZyme
Location: 6838 - 7590 (-)
Type: CAZyme
Location: 6838 - 7590 (-)
Gene ID: MGYG000002911_15_9
Type: STP
Location: 7613 - 8857 (-)
Type: STP
Location: 7613 - 8857 (-)
Gene ID: MGYG000002911_15_10
Type: pfam
Location: 8866 - 10053 (-)
Type: pfam
Location: 8866 - 10053 (-)
Gene ID: MGYG000002911_15_11
Type: CAZyme
Location: 10063 - 11166 (-)
Type: CAZyme
Location: 10063 - 11166 (-)
Gene ID: MGYG000002911_15_12
Type: TC
Location: 11167 - 11922 (-)
Type: TC
Location: 11167 - 11922 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002911_15_12 | vegan > omnivore | 1.15950 | 0.01560 |