Cluster: MGYG000002899_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002899
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002899_14 | MGYG000002899_14_20 | 27103 | 27711 | + | 2.A.77.1.1 |
| pfam | MGYG000002899_14 | MGYG000002899_14_21 | 27935 | 29083 | - | ABC2_membrane | ABC2_membrane_3 |
| pfam | MGYG000002899_14 | MGYG000002899_14_22 | 29070 | 30329 | - | ABC2_membrane_3 |
| TC | MGYG000002899_14 | MGYG000002899_14_23 | 30332 | 31270 | - | 3.A.1.105.7 |
| pfam | MGYG000002899_14 | MGYG000002899_14_24 | 31505 | 31975 | + | tRNA_edit |
| TC | MGYG000002899_14 | MGYG000002899_14_25 | 32130 | 33419 | + | 2.A.55.3.3 |
| CAZyme | MGYG000002899_14 | MGYG000002899_14_26 | 33588 | 35771 | - | CBM48 | GH13_9 |
Gene ID: MGYG000002899_14_20
Type: TC
Location: 27103 - 27711 (+)
Type: TC
Location: 27103 - 27711 (+)
Gene ID: MGYG000002899_14_21
Type: pfam
Location: 27935 - 29083 (-)
Type: pfam
Location: 27935 - 29083 (-)
Gene ID: MGYG000002899_14_22
Type: pfam
Location: 29070 - 30329 (-)
Type: pfam
Location: 29070 - 30329 (-)
Gene ID: MGYG000002899_14_23
Type: TC
Location: 30332 - 31270 (-)
Type: TC
Location: 30332 - 31270 (-)
Gene ID: MGYG000002899_14_24
Type: pfam
Location: 31505 - 31975 (+)
Type: pfam
Location: 31505 - 31975 (+)
Gene ID: MGYG000002899_14_25
Type: TC
Location: 32130 - 33419 (+)
Type: TC
Location: 32130 - 33419 (+)
Gene ID: MGYG000002899_14_26
Type: CAZyme
Location: 33588 - 35771 (-)
Type: CAZyme
Location: 33588 - 35771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.