Cluster: MGYG000002898_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002898
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002898_1 | MGYG000002898_1_222 | 228018 | 229253 | - | 3.D.5.1.1 |
| TC | MGYG000002898_1 | MGYG000002898_1_223 | 229264 | 229860 | - | 3.D.5.1.1 |
| TC | MGYG000002898_1 | MGYG000002898_1_224 | 229864 | 230493 | - | 3.D.5.1.1 |
| TC | MGYG000002898_1 | MGYG000002898_1_225 | 230493 | 231281 | - | 3.D.5.1.1 |
| TC | MGYG000002898_1 | MGYG000002898_1_226 | 231274 | 232509 | - | 3.D.5.1.1 |
| TC | MGYG000002898_1 | MGYG000002898_1_227 | 232512 | 233855 | - | 3.D.5.1.1 |
| NULL(UNKNOWN) | MGYG000002898_1 | MGYG000002898_1_228 | 234572 | 234877 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002898_1 | MGYG000002898_1_229 | 234902 | 235525 | + | GT1 |
Gene ID: MGYG000002898_1_222
Type: TC
Location: 228018 - 229253 (-)
Type: TC
Location: 228018 - 229253 (-)
Gene ID: MGYG000002898_1_223
Type: TC
Location: 229264 - 229860 (-)
Type: TC
Location: 229264 - 229860 (-)
Gene ID: MGYG000002898_1_224
Type: TC
Location: 229864 - 230493 (-)
Type: TC
Location: 229864 - 230493 (-)
Gene ID: MGYG000002898_1_225
Type: TC
Location: 230493 - 231281 (-)
Type: TC
Location: 230493 - 231281 (-)
Gene ID: MGYG000002898_1_226
Type: TC
Location: 231274 - 232509 (-)
Type: TC
Location: 231274 - 232509 (-)
Gene ID: MGYG000002898_1_227
Type: TC
Location: 232512 - 233855 (-)
Type: TC
Location: 232512 - 233855 (-)
Gene ID: MGYG000002898_1_228
Type:
Location: 234572 - 234877 (+)
Type:
Location: 234572 - 234877 (+)
Gene ID: MGYG000002898_1_229
Type: CAZyme
Location: 234902 - 235525 (+)
Type: CAZyme
Location: 234902 - 235525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D pittmaniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002898_1_224 | vegan > omnivore | 1.46911 | 0.02445 |
| MGYG000002898_1_225 | vegetarian > omnivore | 1.29858 | 0.03622 |
| MGYG000002898_1_226 | vegetarian > omnivore | 1.21523 | 0.03622 |