Cluster: MGYG000002898_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002898
- CGC Family ID: CGCFAM_05007
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002898_7 | MGYG000002898_7_109 | 115979 | 116461 | - | 9.B.27.3.2 |
| pfam | MGYG000002898_7 | MGYG000002898_7_110 | 116508 | 117107 | - | Hydrolase | HAD_2 |
| STP | MGYG000002898_7 | MGYG000002898_7_111 | 117269 | 119695 | + | HATPase_c |
| TC | MGYG000002898_7 | MGYG000002898_7_112 | 119883 | 124337 | - | 1.B.12.3.1 |
| TC | MGYG000002898_7 | MGYG000002898_7_113 | 124764 | 125477 | - | 9.B.20.2.2 |
| pfam | MGYG000002898_7 | MGYG000002898_7_114 | 125612 | 126949 | + | UPF0004 | Radical_SAM | TRAM_2 |
| CAZyme | MGYG000002898_7 | MGYG000002898_7_115 | 126970 | 128868 | + | GT41 |
| pfam | MGYG000002898_7 | MGYG000002898_7_116 | 129016 | 130131 | + | Semialdhyde_dh | Semialdhyde_dhC |
| peptidase | MGYG000002898_7 | MGYG000002898_7_117 | 130186 | 131127 | + | S33.UNW |
| TC | MGYG000002898_7 | MGYG000002898_7_118 | 131177 | 132406 | - | 1.B.42.1.2 |
Gene ID: MGYG000002898_7_109
Type: TC
Location: 115979 - 116461 (-)
Type: TC
Location: 115979 - 116461 (-)
Gene ID: MGYG000002898_7_110
Type: pfam
Location: 116508 - 117107 (-)
Type: pfam
Location: 116508 - 117107 (-)
Gene ID: MGYG000002898_7_111
Type: STP
Location: 117269 - 119695 (+)
Type: STP
Location: 117269 - 119695 (+)
Gene ID: MGYG000002898_7_112
Type: TC
Location: 119883 - 124337 (-)
Type: TC
Location: 119883 - 124337 (-)
Gene ID: MGYG000002898_7_113
Type: TC
Location: 124764 - 125477 (-)
Type: TC
Location: 124764 - 125477 (-)
Gene ID: MGYG000002898_7_114
Type: pfam
Location: 125612 - 126949 (+)
Type: pfam
Location: 125612 - 126949 (+)
Gene ID: MGYG000002898_7_115
Type: CAZyme
Location: 126970 - 128868 (+)
Type: CAZyme
Location: 126970 - 128868 (+)
Gene ID: MGYG000002898_7_116
Type: pfam
Location: 129016 - 130131 (+)
Type: pfam
Location: 129016 - 130131 (+)
Gene ID: MGYG000002898_7_117
Type: peptidase
Location: 130186 - 131127 (+)
Type: peptidase
Location: 130186 - 131127 (+)
Gene ID: MGYG000002898_7_118
Type: TC
Location: 131177 - 132406 (-)
Type: TC
Location: 131177 - 132406 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D pittmaniae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.