Cluster: MGYG000002897_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002897
- CGC Family ID: CGCFAM_03615
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002897_1 | MGYG000002897_1_265 | 318532 | 319944 | + | 2.A.1.24.5 |
| pfam | MGYG000002897_1 | MGYG000002897_1_266 | 320067 | 321068 | + | Dak1 |
| pfam | MGYG000002897_1 | MGYG000002897_1_267 | 321062 | 321682 | + | Dak2 |
| TC | MGYG000002897_1 | MGYG000002897_1_268 | 321704 | 324151 | + | 4.A.2.1.17 |
| pfam | MGYG000002897_1 | MGYG000002897_1_269 | 324377 | 326485 | + | DUF6541 |
| TC | MGYG000002897_1 | MGYG000002897_1_270 | 326742 | 328994 | + | 3.A.3.5.31 |
| NULL(UNKNOWN) | MGYG000002897_1 | MGYG000002897_1_271 | 329033 | 329401 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002897_1 | MGYG000002897_1_272 | 329590 | 331659 | - | 2.A.15.1.4 |
| TF | MGYG000002897_1 | MGYG000002897_1_273 | 331832 | 332875 | + | LacI |
| NULL(UNKNOWN) | MGYG000002897_1 | MGYG000002897_1_274 | 333030 | 333809 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002897_1 | MGYG000002897_1_275 | 333827 | 335872 | - | GH35 |
| TC | MGYG000002897_1 | MGYG000002897_1_276 | 335929 | 336891 | - | 3.A.1.2.15 |
| TC | MGYG000002897_1 | MGYG000002897_1_277 | 336884 | 338419 | - | 3.A.1.2.20 |
Gene ID: MGYG000002897_1_265
Type: TC
Location: 318532 - 319944 (+)
Type: TC
Location: 318532 - 319944 (+)
Gene ID: MGYG000002897_1_266
Type: pfam
Location: 320067 - 321068 (+)
Type: pfam
Location: 320067 - 321068 (+)
Gene ID: MGYG000002897_1_267
Type: pfam
Location: 321062 - 321682 (+)
Type: pfam
Location: 321062 - 321682 (+)
Gene ID: MGYG000002897_1_268
Type: TC
Location: 321704 - 324151 (+)
Type: TC
Location: 321704 - 324151 (+)
Gene ID: MGYG000002897_1_269
Type: pfam
Location: 324377 - 326485 (+)
Type: pfam
Location: 324377 - 326485 (+)
Gene ID: MGYG000002897_1_270
Type: TC
Location: 326742 - 328994 (+)
Type: TC
Location: 326742 - 328994 (+)
Gene ID: MGYG000002897_1_271
Type:
Location: 329033 - 329401 (-)
Type:
Location: 329033 - 329401 (-)
Gene ID: MGYG000002897_1_272
Type: TC
Location: 329590 - 331659 (-)
Type: TC
Location: 329590 - 331659 (-)
Gene ID: MGYG000002897_1_273
Type: TF
Location: 331832 - 332875 (+)
Type: TF
Location: 331832 - 332875 (+)
Gene ID: MGYG000002897_1_274
Type:
Location: 333030 - 333809 (-)
Type:
Location: 333030 - 333809 (-)
Gene ID: MGYG000002897_1_275
Type: CAZyme
Location: 333827 - 335872 (-)
Type: CAZyme
Location: 333827 - 335872 (-)
Gene ID: MGYG000002897_1_276
Type: TC
Location: 335929 - 336891 (-)
Type: TC
Location: 335929 - 336891 (-)
Gene ID: MGYG000002897_1_277
Type: TC
Location: 336884 - 338419 (-)
Type: TC
Location: 336884 - 338419 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.