Cluster: MGYG000002889_CGC35
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_10892
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002889_26 | MGYG000002889_26_43 | 55521 | 59276 | - | GH1 | GT4 |
| TC | MGYG000002889_26 | MGYG000002889_26_44 | 59718 | 60485 | - | 3.A.1.3.24 |
| TC | MGYG000002889_26 | MGYG000002889_26_45 | 60487 | 61137 | - | 3.A.1.3.10 |
| TC | MGYG000002889_26 | MGYG000002889_26_46 | 61428 | 62192 | + | 3.A.1.3.27 |
| TF | MGYG000002889_26 | MGYG000002889_26_47 | 62240 | 62845 | + | HTH_3 |
| sulfatase | MGYG000002889_26 | MGYG000002889_26_48 | 62872 | 64200 | + | S1_2 |
| CAZyme | MGYG000002889_26 | MGYG000002889_26_49 | 64233 | 65912 | - | AA3_2 |
| sulfatase | MGYG000002889_26 | MGYG000002889_26_50 | 65940 | 67412 | - | S1_6 |
| STP | MGYG000002889_26 | MGYG000002889_26_51 | 67426 | 68022 | - | TetR_N |
| TC | MGYG000002889_26 | MGYG000002889_26_52 | 68231 | 70258 | + | 2.A.15.1.4 |
| peptidase | MGYG000002889_26 | MGYG000002889_26_53 | 70291 | 70875 | - | C56.UNW |
| pfam | MGYG000002889_26 | MGYG000002889_26_54 | 71002 | 71193 | - | Tautomerase | Tautomerase_2 |
| TC | MGYG000002889_26 | MGYG000002889_26_55 | 71758 | 73119 | - | 1.B.19.1.1 |
| NULL(UNKNOWN) | MGYG000002889_26 | MGYG000002889_26_56 | 73679 | 74101 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002889_26 | MGYG000002889_26_57 | 74471 | 75718 | - | 2.A.42.1.2 |
Gene ID: MGYG000002889_26_43
Type: CAZyme
Location: 55521 - 59276 (-)
Type: CAZyme
Location: 55521 - 59276 (-)
Gene ID: MGYG000002889_26_44
Type: TC
Location: 59718 - 60485 (-)
Type: TC
Location: 59718 - 60485 (-)
Gene ID: MGYG000002889_26_45
Type: TC
Location: 60487 - 61137 (-)
Type: TC
Location: 60487 - 61137 (-)
Gene ID: MGYG000002889_26_46
Type: TC
Location: 61428 - 62192 (+)
Type: TC
Location: 61428 - 62192 (+)
Gene ID: MGYG000002889_26_47
Type: TF
Location: 62240 - 62845 (+)
Type: TF
Location: 62240 - 62845 (+)
Gene ID: MGYG000002889_26_48
Type: sulfatase
Location: 62872 - 64200 (+)
Type: sulfatase
Location: 62872 - 64200 (+)
Gene ID: MGYG000002889_26_49
Type: CAZyme
Location: 64233 - 65912 (-)
Type: CAZyme
Location: 64233 - 65912 (-)
Gene ID: MGYG000002889_26_50
Type: sulfatase
Location: 65940 - 67412 (-)
Type: sulfatase
Location: 65940 - 67412 (-)
Gene ID: MGYG000002889_26_51
Type: STP
Location: 67426 - 68022 (-)
Type: STP
Location: 67426 - 68022 (-)
Gene ID: MGYG000002889_26_52
Type: TC
Location: 68231 - 70258 (+)
Type: TC
Location: 68231 - 70258 (+)
Gene ID: MGYG000002889_26_53
Type: peptidase
Location: 70291 - 70875 (-)
Type: peptidase
Location: 70291 - 70875 (-)
Gene ID: MGYG000002889_26_54
Type: pfam
Location: 71002 - 71193 (-)
Type: pfam
Location: 71002 - 71193 (-)
Gene ID: MGYG000002889_26_55
Type: TC
Location: 71758 - 73119 (-)
Type: TC
Location: 71758 - 73119 (-)
Gene ID: MGYG000002889_26_56
Type:
Location: 73679 - 74101 (-)
Type:
Location: 73679 - 74101 (-)
Gene ID: MGYG000002889_26_57
Type: TC
Location: 74471 - 75718 (-)
Type: TC
Location: 74471 - 75718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.