Cluster: MGYG000002889_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_04025
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002889_19 | MGYG000002889_19_63 | 65480 | 66106 | + | GH23 |
| TF | MGYG000002889_19 | MGYG000002889_19_64 | 66111 | 67058 | - | MarR |
| TC | MGYG000002889_19 | MGYG000002889_19_65 | 67242 | 68183 | + | 3.A.1.2.11 |
| pfam | MGYG000002889_19 | MGYG000002889_19_66 | 68195 | 68803 | + | DUF2291 |
| TC | MGYG000002889_19 | MGYG000002889_19_67 | 68800 | 70314 | + | 3.A.1.2.11 |
| TC | MGYG000002889_19 | MGYG000002889_19_68 | 70317 | 71423 | + | 3.A.1.2.11 |
Gene ID: MGYG000002889_19_63
Type: CAZyme
Location: 65480 - 66106 (+)
Type: CAZyme
Location: 65480 - 66106 (+)
Gene ID: MGYG000002889_19_64
Type: TF
Location: 66111 - 67058 (-)
Type: TF
Location: 66111 - 67058 (-)
Gene ID: MGYG000002889_19_65
Type: TC
Location: 67242 - 68183 (+)
Type: TC
Location: 67242 - 68183 (+)
Gene ID: MGYG000002889_19_66
Type: pfam
Location: 68195 - 68803 (+)
Type: pfam
Location: 68195 - 68803 (+)
Gene ID: MGYG000002889_19_67
Type: TC
Location: 68800 - 70314 (+)
Type: TC
Location: 68800 - 70314 (+)
Gene ID: MGYG000002889_19_68
Type: TC
Location: 70317 - 71423 (+)
Type: TC
Location: 70317 - 71423 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.