Cluster: MGYG000002889_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_00711
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002889_19 | MGYG000002889_19_32 | 33797 | 34219 | + | 9.B.35.1.2 |
| NULL(UNKNOWN) | MGYG000002889_19 | MGYG000002889_19_33 | 34491 | 35816 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000002889_19 | MGYG000002889_19_34 | 35932 | 36117 | - | KGG |
| CAZyme | MGYG000002889_19 | MGYG000002889_19_35 | 36468 | 38543 | - | CBM48 | GH13_11 |
| CAZyme | MGYG000002889_19 | MGYG000002889_19_36 | 38612 | 41110 | - | GH13_26 |
| CAZyme | MGYG000002889_19 | MGYG000002889_19_37 | 41107 | 42894 | - | GH13_10 |
| TC | MGYG000002889_19 | MGYG000002889_19_38 | 43242 | 44696 | + | 2.A.1.1.26 |
Gene ID: MGYG000002889_19_32
Type: TC
Location: 33797 - 34219 (+)
Type: TC
Location: 33797 - 34219 (+)
Gene ID: MGYG000002889_19_33
Type:
Location: 34491 - 35816 (+)
Type:
Location: 34491 - 35816 (+)
Gene ID: MGYG000002889_19_34
Type: pfam
Location: 35932 - 36117 (-)
Type: pfam
Location: 35932 - 36117 (-)
Gene ID: MGYG000002889_19_35
Type: CAZyme
Location: 36468 - 38543 (-)
Type: CAZyme
Location: 36468 - 38543 (-)
Gene ID: MGYG000002889_19_36
Type: CAZyme
Location: 38612 - 41110 (-)
Type: CAZyme
Location: 38612 - 41110 (-)
Gene ID: MGYG000002889_19_37
Type: CAZyme
Location: 41107 - 42894 (-)
Type: CAZyme
Location: 41107 - 42894 (-)
Gene ID: MGYG000002889_19_38
Type: TC
Location: 43242 - 44696 (+)
Type: TC
Location: 43242 - 44696 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.