Cluster: MGYG000002889_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_09881
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002889_18 | MGYG000002889_18_53 | 52815 | 53777 | + | GT2 |
| pfam | MGYG000002889_18 | MGYG000002889_18_54 | 53917 | 54345 | + | PilM |
| peptidase | MGYG000002889_18 | MGYG000002889_18_55 | 54347 | 54961 | + | A24.UPA |
| CAZyme | MGYG000002889_18 | MGYG000002889_18_56 | 54946 | 55419 | + | GH23 |
| NULL(UNKNOWN) | MGYG000002889_18 | MGYG000002889_18_57 | 55423 | 55854 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002889_18 | MGYG000002889_18_58 | 55913 | 56380 | + | GH23 |
| TC | MGYG000002889_18 | MGYG000002889_18_59 | 56431 | 56910 | + | 3.A.7.10.1 |
| TC | MGYG000002889_18 | MGYG000002889_18_60 | 56907 | 57731 | + | 3.A.7.10.1 |
| TC | MGYG000002889_18 | MGYG000002889_18_61 | 57731 | 58894 | + | 3.A.7.10.1 |
| NULL(UNKNOWN) | MGYG000002889_18 | MGYG000002889_18_62 | 58891 | 59181 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | MGYG000002889_18 | MGYG000002889_18_63 | 59212 | 63030 | + | HTH_7 |
| TC | MGYG000002889_18 | MGYG000002889_18_64 | 63053 | 63403 | + | 3.A.7.10.1 |
| TC | MGYG000002889_18 | MGYG000002889_18_65 | 63414 | 64121 | + | 3.A.7.10.1 |
| TC | MGYG000002889_18 | MGYG000002889_18_66 | 64130 | 65125 | + | 3.A.7.10.1 |
Gene ID: MGYG000002889_18_53
Type: CAZyme
Location: 52815 - 53777 (+)
Type: CAZyme
Location: 52815 - 53777 (+)
Gene ID: MGYG000002889_18_54
Type: pfam
Location: 53917 - 54345 (+)
Type: pfam
Location: 53917 - 54345 (+)
Gene ID: MGYG000002889_18_55
Type: peptidase
Location: 54347 - 54961 (+)
Type: peptidase
Location: 54347 - 54961 (+)
Gene ID: MGYG000002889_18_56
Type: CAZyme
Location: 54946 - 55419 (+)
Type: CAZyme
Location: 54946 - 55419 (+)
Gene ID: MGYG000002889_18_57
Type:
Location: 55423 - 55854 (+)
Type:
Location: 55423 - 55854 (+)
Gene ID: MGYG000002889_18_58
Type: CAZyme
Location: 55913 - 56380 (+)
Type: CAZyme
Location: 55913 - 56380 (+)
Gene ID: MGYG000002889_18_59
Type: TC
Location: 56431 - 56910 (+)
Type: TC
Location: 56431 - 56910 (+)
Gene ID: MGYG000002889_18_60
Type: TC
Location: 56907 - 57731 (+)
Type: TC
Location: 56907 - 57731 (+)
Gene ID: MGYG000002889_18_61
Type: TC
Location: 57731 - 58894 (+)
Type: TC
Location: 57731 - 58894 (+)
Gene ID: MGYG000002889_18_62
Type:
Location: 58891 - 59181 (+)
Type:
Location: 58891 - 59181 (+)
Gene ID: MGYG000002889_18_63
Type: STP
Location: 59212 - 63030 (+)
Type: STP
Location: 59212 - 63030 (+)
Gene ID: MGYG000002889_18_64
Type: TC
Location: 63053 - 63403 (+)
Type: TC
Location: 63053 - 63403 (+)
Gene ID: MGYG000002889_18_65
Type: TC
Location: 63414 - 64121 (+)
Type: TC
Location: 63414 - 64121 (+)
Gene ID: MGYG000002889_18_66
Type: TC
Location: 64130 - 65125 (+)
Type: TC
Location: 64130 - 65125 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.