Cluster: MGYG000002889_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_05658
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002889_17 | MGYG000002889_17_57 | 61467 | 62123 | - | 3.A.1.24.5 |
| TC | MGYG000002889_17 | MGYG000002889_17_58 | 62104 | 63222 | - | 3.A.1.24.1 |
| TC | MGYG000002889_17 | MGYG000002889_17_59 | 63234 | 64064 | - | 3.A.1.24.1 |
| STP | MGYG000002889_17 | MGYG000002889_17_60 | 64279 | 64920 | + | TetR_N |
| pfam | MGYG000002889_17 | MGYG000002889_17_61 | 64994 | 66376 | + | FAD_binding_4 | ALO |
| CAZyme | MGYG000002889_17 | MGYG000002889_17_62 | 66396 | 67223 | + | GT8 |
| CAZyme | MGYG000002889_17 | MGYG000002889_17_63 | 67263 | 68384 | - | GH179 |
| pfam | MGYG000002889_17 | MGYG000002889_17_64 | 69857 | 70909 | + | Bac_luciferase |
| TC | MGYG000002889_17 | MGYG000002889_17_65 | 71198 | 72886 | + | 3.A.1.5.39 |
| TC | MGYG000002889_17 | MGYG000002889_17_66 | 72940 | 73899 | + | 3.A.1.5.20 |
| TC | MGYG000002889_17 | MGYG000002889_17_67 | 73899 | 74846 | + | 3.A.1.5.20 |
| TC | MGYG000002889_17 | MGYG000002889_17_68 | 74843 | 75823 | + | 3.A.1.5.35 |
| TC | MGYG000002889_17 | MGYG000002889_17_69 | 75820 | 76800 | + | 3.A.1.5.20 |
Gene ID: MGYG000002889_17_57
Type: TC
Location: 61467 - 62123 (-)
Type: TC
Location: 61467 - 62123 (-)
Gene ID: MGYG000002889_17_58
Type: TC
Location: 62104 - 63222 (-)
Type: TC
Location: 62104 - 63222 (-)
Gene ID: MGYG000002889_17_59
Type: TC
Location: 63234 - 64064 (-)
Type: TC
Location: 63234 - 64064 (-)
Gene ID: MGYG000002889_17_60
Type: STP
Location: 64279 - 64920 (+)
Type: STP
Location: 64279 - 64920 (+)
Gene ID: MGYG000002889_17_61
Type: pfam
Location: 64994 - 66376 (+)
Type: pfam
Location: 64994 - 66376 (+)
Gene ID: MGYG000002889_17_62
Type: CAZyme
Location: 66396 - 67223 (+)
Type: CAZyme
Location: 66396 - 67223 (+)
Gene ID: MGYG000002889_17_63
Type: CAZyme
Location: 67263 - 68384 (-)
Type: CAZyme
Location: 67263 - 68384 (-)
Gene ID: MGYG000002889_17_64
Type: pfam
Location: 69857 - 70909 (+)
Type: pfam
Location: 69857 - 70909 (+)
Gene ID: MGYG000002889_17_65
Type: TC
Location: 71198 - 72886 (+)
Type: TC
Location: 71198 - 72886 (+)
Gene ID: MGYG000002889_17_66
Type: TC
Location: 72940 - 73899 (+)
Type: TC
Location: 72940 - 73899 (+)
Gene ID: MGYG000002889_17_67
Type: TC
Location: 73899 - 74846 (+)
Type: TC
Location: 73899 - 74846 (+)
Gene ID: MGYG000002889_17_68
Type: TC
Location: 74843 - 75823 (+)
Type: TC
Location: 74843 - 75823 (+)
Gene ID: MGYG000002889_17_69
Type: TC
Location: 75820 - 76800 (+)
Type: TC
Location: 75820 - 76800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.