Cluster: MGYG000002888_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002888
- CGC Family ID: CGCFAM_04061
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002888_24 | MGYG000002888_24_8 | 4485 | 6137 | - | 9.B.18.1.2 |
| pfam | MGYG000002888_24 | MGYG000002888_24_9 | 6587 | 7486 | + | NTP_transferase | NTP_transf_3 |
| NULL(UNKNOWN) | MGYG000002888_24 | MGYG000002888_24_10 | 7472 | 7966 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002888_24 | MGYG000002888_24_11 | 8085 | 9146 | + | GT4 |
| NULL(UNKNOWN) | MGYG000002888_24 | MGYG000002888_24_12 | 9330 | 10622 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002888_24 | MGYG000002888_24_13 | 10623 | 12389 | + | 8.A.3.1.2 |
| pfam | MGYG000002888_24 | MGYG000002888_24_14 | 12405 | 12989 | + | LMWPc |
| NULL(UNKNOWN) | MGYG000002888_24 | MGYG000002888_24_15 | 13039 | 13620 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002888_24 | MGYG000002888_24_16 | 13842 | 16058 | + | 4.A.1.2.2 |
| TC | MGYG000002888_24 | MGYG000002888_24_17 | 16089 | 18404 | - | 2.A.6.5.1 |
Gene ID: MGYG000002888_24_8
Type: TC
Location: 4485 - 6137 (-)
Type: TC
Location: 4485 - 6137 (-)
Gene ID: MGYG000002888_24_9
Type: pfam
Location: 6587 - 7486 (+)
Type: pfam
Location: 6587 - 7486 (+)
Gene ID: MGYG000002888_24_10
Type:
Location: 7472 - 7966 (-)
Type:
Location: 7472 - 7966 (-)
Gene ID: MGYG000002888_24_11
Type: CAZyme
Location: 8085 - 9146 (+)
Type: CAZyme
Location: 8085 - 9146 (+)
Gene ID: MGYG000002888_24_12
Type:
Location: 9330 - 10622 (+)
Type:
Location: 9330 - 10622 (+)
Gene ID: MGYG000002888_24_13
Type: TC
Location: 10623 - 12389 (+)
Type: TC
Location: 10623 - 12389 (+)
Gene ID: MGYG000002888_24_14
Type: pfam
Location: 12405 - 12989 (+)
Type: pfam
Location: 12405 - 12989 (+)
Gene ID: MGYG000002888_24_15
Type:
Location: 13039 - 13620 (+)
Type:
Location: 13039 - 13620 (+)
Gene ID: MGYG000002888_24_16
Type: TC
Location: 13842 - 16058 (+)
Type: TC
Location: 13842 - 16058 (+)
Gene ID: MGYG000002888_24_17
Type: TC
Location: 16089 - 18404 (-)
Type: TC
Location: 16089 - 18404 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.