Cluster: MGYG000002888_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000002888
- CGC Family ID: CGCFAM_02900
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002888_1 | MGYG000002888_1_12 | 15508 | 16713 | + | 4.D.2.4.1 |
| pfam | MGYG000002888_1 | MGYG000002888_1_13 | 16821 | 17312 | + | DUF3054 |
| TC | MGYG000002888_1 | MGYG000002888_1_14 | 17373 | 18875 | + | 2.A.17.1.7 |
| NULL(UNKNOWN) | MGYG000002888_1 | MGYG000002888_1_15 | 18993 | 20426 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002888_1 | MGYG000002888_1_16 | 21066 | 22013 | - | CE5 |
| NULL(UNKNOWN) | MGYG000002888_1 | MGYG000002888_1_17 | 22038 | 22700 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002888_1 | MGYG000002888_1_18 | 22821 | 24857 | - | CE1 |
| CAZyme | MGYG000002888_1 | MGYG000002888_1_19 | 25100 | 26290 | - | CE1 |
| pfam | MGYG000002888_1 | MGYG000002888_1_20 | 26580 | 27617 | - | UbiA |
| pfam | MGYG000002888_1 | MGYG000002888_1_21 | 27700 | 28239 | - | PAP2 | PAP2_3 |
| CAZyme | MGYG000002888_1 | MGYG000002888_1_22 | 28229 | 30316 | - | GT2 |
| peptidase | MGYG000002888_1 | MGYG000002888_1_23 | 30558 | 31499 | - | S09.UPW |
| NULL(UNKNOWN) | MGYG000002888_1 | MGYG000002888_1_24 | 31499 | 31633 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002888_1 | MGYG000002888_1_25 | 31913 | 34150 | + | 4.A.1.1.6 |
| sulfatase | MGYG000002888_1 | MGYG000002888_1_26 | 34134 | 35678 | - | S1_6 |
| TC | MGYG000002888_1 | MGYG000002888_1_27 | 35721 | 38075 | - | 2.A.15.1.4 |
| NULL(UNKNOWN) | MGYG000002888_1 | MGYG000002888_1_28 | 38265 | 38372 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002888_1 | MGYG000002888_1_29 | 38414 | 40186 | + | AA3_2 |
Gene ID: MGYG000002888_1_12
Type: TC
Location: 15508 - 16713 (+)
Type: TC
Location: 15508 - 16713 (+)
Gene ID: MGYG000002888_1_13
Type: pfam
Location: 16821 - 17312 (+)
Type: pfam
Location: 16821 - 17312 (+)
Gene ID: MGYG000002888_1_14
Type: TC
Location: 17373 - 18875 (+)
Type: TC
Location: 17373 - 18875 (+)
Gene ID: MGYG000002888_1_15
Type:
Location: 18993 - 20426 (-)
Type:
Location: 18993 - 20426 (-)
Gene ID: MGYG000002888_1_16
Type: CAZyme
Location: 21066 - 22013 (-)
Type: CAZyme
Location: 21066 - 22013 (-)
Gene ID: MGYG000002888_1_17
Type:
Location: 22038 - 22700 (-)
Type:
Location: 22038 - 22700 (-)
Gene ID: MGYG000002888_1_18
Type: CAZyme
Location: 22821 - 24857 (-)
Type: CAZyme
Location: 22821 - 24857 (-)
Gene ID: MGYG000002888_1_19
Type: CAZyme
Location: 25100 - 26290 (-)
Type: CAZyme
Location: 25100 - 26290 (-)
Gene ID: MGYG000002888_1_20
Type: pfam
Location: 26580 - 27617 (-)
Type: pfam
Location: 26580 - 27617 (-)
Gene ID: MGYG000002888_1_21
Type: pfam
Location: 27700 - 28239 (-)
Type: pfam
Location: 27700 - 28239 (-)
Gene ID: MGYG000002888_1_22
Type: CAZyme
Location: 28229 - 30316 (-)
Type: CAZyme
Location: 28229 - 30316 (-)
Gene ID: MGYG000002888_1_23
Type: peptidase
Location: 30558 - 31499 (-)
Type: peptidase
Location: 30558 - 31499 (-)
Gene ID: MGYG000002888_1_24
Type:
Location: 31499 - 31633 (-)
Type:
Location: 31499 - 31633 (-)
Gene ID: MGYG000002888_1_25
Type: TC
Location: 31913 - 34150 (+)
Type: TC
Location: 31913 - 34150 (+)
Gene ID: MGYG000002888_1_26
Type: sulfatase
Location: 34134 - 35678 (-)
Type: sulfatase
Location: 34134 - 35678 (-)
Gene ID: MGYG000002888_1_27
Type: TC
Location: 35721 - 38075 (-)
Type: TC
Location: 35721 - 38075 (-)
Gene ID: MGYG000002888_1_28
Type:
Location: 38265 - 38372 (-)
Type:
Location: 38265 - 38372 (-)
Gene ID: MGYG000002888_1_29
Type: CAZyme
Location: 38414 - 40186 (+)
Type: CAZyme
Location: 38414 - 40186 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.