Cluster: MGYG000002860_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002860
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002860_5 | MGYG000002860_5_16 | 20411 | 22825 | - | 9.B.144.1.5 |
| CAZyme | MGYG000002860_5 | MGYG000002860_5_17 | 22809 | 23777 | - | GT2 |
| CAZyme | MGYG000002860_5 | MGYG000002860_5_18 | 23784 | 24755 | - | GT81 |
| pfam | MGYG000002860_5 | MGYG000002860_5_19 | 24814 | 26682 | + | DUF6020 |
| TC | MGYG000002860_5 | MGYG000002860_5_20 | 26772 | 27617 | + | 3.A.1.103.6 |
| TC | MGYG000002860_5 | MGYG000002860_5_21 | 27629 | 28396 | + | 3.A.1.103.1 |
Gene ID: MGYG000002860_5_16
Type: TC
Location: 20411 - 22825 (-)
Type: TC
Location: 20411 - 22825 (-)
Gene ID: MGYG000002860_5_17
Type: CAZyme
Location: 22809 - 23777 (-)
Type: CAZyme
Location: 22809 - 23777 (-)
Gene ID: MGYG000002860_5_18
Type: CAZyme
Location: 23784 - 24755 (-)
Type: CAZyme
Location: 23784 - 24755 (-)
Gene ID: MGYG000002860_5_19
Type: pfam
Location: 24814 - 26682 (+)
Type: pfam
Location: 24814 - 26682 (+)
Gene ID: MGYG000002860_5_20
Type: TC
Location: 26772 - 27617 (+)
Type: TC
Location: 26772 - 27617 (+)
Gene ID: MGYG000002860_5_21
Type: TC
Location: 27629 - 28396 (+)
Type: TC
Location: 27629 - 28396 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.