Cluster: MGYG000002860_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002860
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002860_55 | MGYG000002860_55_3 | 2135 | 3556 | - | GH1 |
| TC | MGYG000002860_55 | MGYG000002860_55_4 | 3632 | 5410 | - | 4.A.3.1.1 |
| TF | MGYG000002860_55 | MGYG000002860_55_5 | 5686 | 6696 | + | LacI |
| TC | MGYG000002860_55 | MGYG000002860_55_6 | 7110 | 8870 | - | 4.A.3.1.1 |
| CAZyme | MGYG000002860_55 | MGYG000002860_55_7 | 9047 | 10489 | - | GH1 |
Gene ID: MGYG000002860_55_3
Type: CAZyme
Location: 2135 - 3556 (-)
Type: CAZyme
Location: 2135 - 3556 (-)
Gene ID: MGYG000002860_55_4
Type: TC
Location: 3632 - 5410 (-)
Type: TC
Location: 3632 - 5410 (-)
Gene ID: MGYG000002860_55_5
Type: TF
Location: 5686 - 6696 (+)
Type: TF
Location: 5686 - 6696 (+)
Gene ID: MGYG000002860_55_6
Type: TC
Location: 7110 - 8870 (-)
Type: TC
Location: 7110 - 8870 (-)
Gene ID: MGYG000002860_55_7
Type: CAZyme
Location: 9047 - 10489 (-)
Type: CAZyme
Location: 9047 - 10489 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.