Cluster: MGYG000002859_CGC5
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002859
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002859_3 | MGYG000002859_3_91 | 90675 | 92051 | - | GH13_20 |
| TC | MGYG000002859_3 | MGYG000002859_3_92 | 92205 | 93401 | - | 2.A.1.2.18 |
| TC | MGYG000002859_3 | MGYG000002859_3_93 | 93522 | 95882 | - | 9.A.8.1.6 |
| peptidase | MGYG000002859_3 | MGYG000002859_3_94 | 96355 | 97254 | - | S09.UPW |
| TC | MGYG000002859_3 | MGYG000002859_3_95 | 97498 | 98061 | + | 4.A.1.2.6 |
| pfam | MGYG000002859_3 | MGYG000002859_3_96 | 98244 | 99647 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MGYG000002859_3 | MGYG000002859_3_97 | 99906 | 100691 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002859_3 | MGYG000002859_3_98 | 100852 | 101832 | + | 3.A.1.34.1 |
| TC | MGYG000002859_3 | MGYG000002859_3_99 | 102037 | 102960 | + | 3.A.1.34.1 |
| TC | MGYG000002859_3 | MGYG000002859_3_100 | 102953 | 103747 | + | 3.A.1.34.1 |
| pfam | MGYG000002859_3 | MGYG000002859_3_101 | 103820 | 105847 | + | Metallophos | 5_nucleotid_C |
| TC | MGYG000002859_3 | MGYG000002859_3_102 | 105977 | 106795 | + | 1.A.23.4.2 |
| pfam | MGYG000002859_3 | MGYG000002859_3_103 | 106909 | 108825 | + | Bmp |
| pfam | MGYG000002859_3 | MGYG000002859_3_104 | 108822 | 109532 | + | Metallophos | Metallophos_2 |
| TC | MGYG000002859_3 | MGYG000002859_3_105 | 109767 | 110474 | - | 1.C.82.1.1 |
Gene ID: MGYG000002859_3_91
Type: CAZyme
Location: 90675 - 92051 (-)
Type: CAZyme
Location: 90675 - 92051 (-)
Gene ID: MGYG000002859_3_92
Type: TC
Location: 92205 - 93401 (-)
Type: TC
Location: 92205 - 93401 (-)
Gene ID: MGYG000002859_3_93
Type: TC
Location: 93522 - 95882 (-)
Type: TC
Location: 93522 - 95882 (-)
Gene ID: MGYG000002859_3_94
Type: peptidase
Location: 96355 - 97254 (-)
Type: peptidase
Location: 96355 - 97254 (-)
Gene ID: MGYG000002859_3_95
Type: TC
Location: 97498 - 98061 (+)
Type: TC
Location: 97498 - 98061 (+)
Gene ID: MGYG000002859_3_96
Type: pfam
Location: 98244 - 99647 (+)
Type: pfam
Location: 98244 - 99647 (+)
Gene ID: MGYG000002859_3_97
Type:
Location: 99906 - 100691 (+)
Type:
Location: 99906 - 100691 (+)
Gene ID: MGYG000002859_3_98
Type: TC
Location: 100852 - 101832 (+)
Type: TC
Location: 100852 - 101832 (+)
Gene ID: MGYG000002859_3_99
Type: TC
Location: 102037 - 102960 (+)
Type: TC
Location: 102037 - 102960 (+)
Gene ID: MGYG000002859_3_100
Type: TC
Location: 102953 - 103747 (+)
Type: TC
Location: 102953 - 103747 (+)
Gene ID: MGYG000002859_3_101
Type: pfam
Location: 103820 - 105847 (+)
Type: pfam
Location: 103820 - 105847 (+)
Gene ID: MGYG000002859_3_102
Type: TC
Location: 105977 - 106795 (+)
Type: TC
Location: 105977 - 106795 (+)
Gene ID: MGYG000002859_3_103
Type: pfam
Location: 106909 - 108825 (+)
Type: pfam
Location: 106909 - 108825 (+)
Gene ID: MGYG000002859_3_104
Type: pfam
Location: 108822 - 109532 (+)
Type: pfam
Location: 108822 - 109532 (+)
Gene ID: MGYG000002859_3_105
Type: TC
Location: 109767 - 110474 (-)
Type: TC
Location: 109767 - 110474 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002859_3_101 | vegan > omnivore | 1.91011 | 0.01260 |
| MGYG000002859_3_101 | vegetarian > omnivore | 1.41157 | 0.02517 |