Cluster: MGYG000002859_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000002859
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002859_9 | MGYG000002859_9_51 | 51225 | 52466 | + | GT111 |
| CAZyme | MGYG000002859_9 | MGYG000002859_9_52 | 52542 | 54941 | + | GT2 | GT2 |
| pfam | MGYG000002859_9 | MGYG000002859_9_53 | 55020 | 57203 | - | DUF7654 | DUF7657 |
| pfam | MGYG000002859_9 | MGYG000002859_9_54 | 57230 | 57586 | - | DUF2304 |
| CAZyme | MGYG000002859_9 | MGYG000002859_9_55 | 57583 | 58317 | - | GT2 |
| CAZyme | MGYG000002859_9 | MGYG000002859_9_56 | 58323 | 59564 | - | GT4 |
| pfam | MGYG000002859_9 | MGYG000002859_9_57 | 59564 | 60739 | - | Epimerase_2 |
| CAZyme | MGYG000002859_9 | MGYG000002859_9_58 | 60761 | 61825 | - | GT4 |
| pfam | MGYG000002859_9 | MGYG000002859_9_59 | 61885 | 63102 | - | Epimerase | Polysacc_synt_C |
| TC | MGYG000002859_9 | MGYG000002859_9_60 | 63104 | 64159 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | MGYG000002859_9 | MGYG000002859_9_61 | 64410 | 64907 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002859_9 | MGYG000002859_9_62 | 65648 | 68098 | - | GH73 |
Gene ID: MGYG000002859_9_51
Type: CAZyme
Location: 51225 - 52466 (+)
Type: CAZyme
Location: 51225 - 52466 (+)
Gene ID: MGYG000002859_9_52
Type: CAZyme
Location: 52542 - 54941 (+)
Type: CAZyme
Location: 52542 - 54941 (+)
Gene ID: MGYG000002859_9_53
Type: pfam
Location: 55020 - 57203 (-)
Type: pfam
Location: 55020 - 57203 (-)
Gene ID: MGYG000002859_9_54
Type: pfam
Location: 57230 - 57586 (-)
Type: pfam
Location: 57230 - 57586 (-)
Gene ID: MGYG000002859_9_55
Type: CAZyme
Location: 57583 - 58317 (-)
Type: CAZyme
Location: 57583 - 58317 (-)
Gene ID: MGYG000002859_9_56
Type: CAZyme
Location: 58323 - 59564 (-)
Type: CAZyme
Location: 58323 - 59564 (-)
Gene ID: MGYG000002859_9_57
Type: pfam
Location: 59564 - 60739 (-)
Type: pfam
Location: 59564 - 60739 (-)
Gene ID: MGYG000002859_9_58
Type: CAZyme
Location: 60761 - 61825 (-)
Type: CAZyme
Location: 60761 - 61825 (-)
Gene ID: MGYG000002859_9_59
Type: pfam
Location: 61885 - 63102 (-)
Type: pfam
Location: 61885 - 63102 (-)
Gene ID: MGYG000002859_9_60
Type: TC
Location: 63104 - 64159 (-)
Type: TC
Location: 63104 - 64159 (-)
Gene ID: MGYG000002859_9_61
Type:
Location: 64410 - 64907 (-)
Type:
Location: 64410 - 64907 (-)
Gene ID: MGYG000002859_9_62
Type: CAZyme
Location: 65648 - 68098 (-)
Type: CAZyme
Location: 65648 - 68098 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002859_9_51 | vegan > omnivore | 1.25755 | 0.01260 |
| MGYG000002859_9_51 | vegetarian > omnivore | 1.94989 | 0.02517 |
| MGYG000002859_9_52 | vegan > omnivore | 2.55454 | 0.01260 |
| MGYG000002859_9_52 | vegetarian > omnivore | 3.21863 | 0.02517 |
| MGYG000002859_9_54 | vegan > omnivore | 1.07553 | 0.01260 |
| MGYG000002859_9_54 | vegetarian > omnivore | 1.37823 | 0.02517 |
| MGYG000002859_9_55 | vegan > omnivore | 1.49082 | 0.01260 |
| MGYG000002859_9_55 | vegetarian > omnivore | 2.41163 | 0.02517 |
| MGYG000002859_9_56 | vegetarian > omnivore | 1.50077 | 0.02517 |
| MGYG000002859_9_59 | vegetarian > omnivore | 1.35116 | 0.02517 |
| MGYG000002859_9_59 | vegetarian > vegan | 1.79798 | 0.02605 |
| MGYG000002859_9_61 | vegan > omnivore | 1.61265 | 0.01260 |
| MGYG000002859_9_61 | vegetarian > omnivore | 2.39525 | 0.02517 |
| MGYG000002859_9_62 | vegan > omnivore | 1.74392 | 0.01260 |
| MGYG000002859_9_62 | vegetarian > omnivore | 2.45185 | 0.02517 |