Cluster: MGYG000002858_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002858
- CGC Family ID: CGCFAM_09244
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002858_14 | MGYG000002858_14_28 | 37314 | 38777 | - | 2.A.118.1.2 |
| TF | MGYG000002858_14 | MGYG000002858_14_29 | 38975 | 39709 | - | GntR |
| pfam | MGYG000002858_14 | MGYG000002858_14_30 | 39964 | 42717 | - | Sigma54_activat | PRD | EIIA-man |
| CAZyme | MGYG000002858_14 | MGYG000002858_14_31 | 43266 | 44702 | - | GH32 |
| pfam | MGYG000002858_14 | MGYG000002858_14_32 | 44732 | 45136 | - | EIIA-man |
| TC | MGYG000002858_14 | MGYG000002858_14_33 | 45170 | 46030 | - | 4.A.6.1.13 |
| TC | MGYG000002858_14 | MGYG000002858_14_34 | 46023 | 46796 | - | 4.A.6.1.13 |
| TC | MGYG000002858_14 | MGYG000002858_14_35 | 46812 | 47300 | - | 4.A.6.1.16 |
| pfam | MGYG000002858_14 | MGYG000002858_14_36 | 48644 | 49435 | + | ADH_Fe_C |
| pfam | MGYG000002858_14 | MGYG000002858_14_37 | 49830 | 50228 | - | DUF956 |
| TC | MGYG000002858_14 | MGYG000002858_14_38 | 50349 | 51269 | - | 4.A.6.1.15 |
| TC | MGYG000002858_14 | MGYG000002858_14_39 | 51286 | 52104 | - | 4.A.6.1.15 |
| TC | MGYG000002858_14 | MGYG000002858_14_40 | 52123 | 53112 | - | 4.A.6.1.15 |
Gene ID: MGYG000002858_14_28
Type: TC
Location: 37314 - 38777 (-)
Type: TC
Location: 37314 - 38777 (-)
Gene ID: MGYG000002858_14_29
Type: TF
Location: 38975 - 39709 (-)
Type: TF
Location: 38975 - 39709 (-)
Gene ID: MGYG000002858_14_30
Type: pfam
Location: 39964 - 42717 (-)
Type: pfam
Location: 39964 - 42717 (-)
Gene ID: MGYG000002858_14_31
Type: CAZyme
Location: 43266 - 44702 (-)
Type: CAZyme
Location: 43266 - 44702 (-)
Gene ID: MGYG000002858_14_32
Type: pfam
Location: 44732 - 45136 (-)
Type: pfam
Location: 44732 - 45136 (-)
Gene ID: MGYG000002858_14_33
Type: TC
Location: 45170 - 46030 (-)
Type: TC
Location: 45170 - 46030 (-)
Gene ID: MGYG000002858_14_34
Type: TC
Location: 46023 - 46796 (-)
Type: TC
Location: 46023 - 46796 (-)
Gene ID: MGYG000002858_14_35
Type: TC
Location: 46812 - 47300 (-)
Type: TC
Location: 46812 - 47300 (-)
Gene ID: MGYG000002858_14_36
Type: pfam
Location: 48644 - 49435 (+)
Type: pfam
Location: 48644 - 49435 (+)
Gene ID: MGYG000002858_14_37
Type: pfam
Location: 49830 - 50228 (-)
Type: pfam
Location: 49830 - 50228 (-)
Gene ID: MGYG000002858_14_38
Type: TC
Location: 50349 - 51269 (-)
Type: TC
Location: 50349 - 51269 (-)
Gene ID: MGYG000002858_14_39
Type: TC
Location: 51286 - 52104 (-)
Type: TC
Location: 51286 - 52104 (-)
Gene ID: MGYG000002858_14_40
Type: TC
Location: 52123 - 53112 (-)
Type: TC
Location: 52123 - 53112 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541725
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002858_14_29 | vegan > omnivore | 1.58490 | 0.00842 |
| MGYG000002858_14_29 | vegetarian > omnivore | 2.23898 | 0.03196 |
| MGYG000002858_14_35 | vegetarian > omnivore | 1.35992 | 0.03196 |