Cluster: MGYG000002852_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000002852
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002852_17 | MGYG000002852_17_8 | 9521 | 12817 | - | GH13_39 | GH77 |
| CAZyme | MGYG000002852_17 | MGYG000002852_17_9 | 13036 | 15279 | - | GT5 |
| pfam | MGYG000002852_17 | MGYG000002852_17_10 | 15369 | 16496 | - | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000002852_17 | MGYG000002852_17_11 | 16501 | 17649 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000002852_17 | MGYG000002852_17_12 | 17758 | 20184 | - | GT35 |
| CAZyme | MGYG000002852_17 | MGYG000002852_17_13 | 20279 | 22534 | - | CBM48 | GH13_9 |
| pfam | MGYG000002852_17 | MGYG000002852_17_14 | 22881 | 23570 | + | Hydrolase | HAD_2 |
| pfam | MGYG000002852_17 | MGYG000002852_17_15 | 23580 | 24221 | + | TPK_catalytic | TPK_B1_binding |
| TC | MGYG000002852_17 | MGYG000002852_17_16 | 24590 | 26623 | + | 3.A.1.121.4 |
| NULL(UNKNOWN) | MGYG000002852_17 | MGYG000002852_17_17 | 26610 | 26906 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002852_17 | MGYG000002852_17_18 | 26916 | 27599 | + | 9.B.149.1.11 |
Gene ID: MGYG000002852_17_8
Type: CAZyme
Location: 9521 - 12817 (-)
Type: CAZyme
Location: 9521 - 12817 (-)
Gene ID: MGYG000002852_17_9
Type: CAZyme
Location: 13036 - 15279 (-)
Type: CAZyme
Location: 13036 - 15279 (-)
Gene ID: MGYG000002852_17_10
Type: pfam
Location: 15369 - 16496 (-)
Type: pfam
Location: 15369 - 16496 (-)
Gene ID: MGYG000002852_17_11
Type: pfam
Location: 16501 - 17649 (-)
Type: pfam
Location: 16501 - 17649 (-)
Gene ID: MGYG000002852_17_12
Type: CAZyme
Location: 17758 - 20184 (-)
Type: CAZyme
Location: 17758 - 20184 (-)
Gene ID: MGYG000002852_17_13
Type: CAZyme
Location: 20279 - 22534 (-)
Type: CAZyme
Location: 20279 - 22534 (-)
Gene ID: MGYG000002852_17_14
Type: pfam
Location: 22881 - 23570 (+)
Type: pfam
Location: 22881 - 23570 (+)
Gene ID: MGYG000002852_17_15
Type: pfam
Location: 23580 - 24221 (+)
Type: pfam
Location: 23580 - 24221 (+)
Gene ID: MGYG000002852_17_16
Type: TC
Location: 24590 - 26623 (+)
Type: TC
Location: 24590 - 26623 (+)
Gene ID: MGYG000002852_17_17
Type:
Location: 26610 - 26906 (+)
Type:
Location: 26610 - 26906 (+)
Gene ID: MGYG000002852_17_18
Type: TC
Location: 26916 - 27599 (+)
Type: TC
Location: 26916 - 27599 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.