Cluster: MGYG000002851_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002851
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002851_2 | MGYG000002851_2_4 | 2639 | 4015 | - | GH13_20 |
| TC | MGYG000002851_2 | MGYG000002851_2_5 | 4198 | 5394 | - | 2.A.1.2.18 |
| TC | MGYG000002851_2 | MGYG000002851_2_6 | 5515 | 7875 | - | 9.A.8.1.6 |
| peptidase | MGYG000002851_2 | MGYG000002851_2_7 | 8347 | 9246 | - | S09.UPW |
| TC | MGYG000002851_2 | MGYG000002851_2_8 | 9490 | 10053 | + | 4.A.1.2.6 |
| pfam | MGYG000002851_2 | MGYG000002851_2_9 | 10235 | 11638 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MGYG000002851_2 | MGYG000002851_2_10 | 11897 | 12682 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002851_2 | MGYG000002851_2_11 | 12843 | 13823 | + | 3.A.1.34.1 |
| TC | MGYG000002851_2 | MGYG000002851_2_12 | 14027 | 14950 | + | 3.A.1.34.1 |
| TC | MGYG000002851_2 | MGYG000002851_2_13 | 14943 | 15737 | + | 3.A.1.34.1 |
| pfam | MGYG000002851_2 | MGYG000002851_2_14 | 15896 | 17920 | + | Metallophos | 5_nucleotid_C |
| TC | MGYG000002851_2 | MGYG000002851_2_15 | 18050 | 18817 | + | 1.A.23.4.2 |
| pfam | MGYG000002851_2 | MGYG000002851_2_16 | 18909 | 20825 | + | Bmp |
| pfam | MGYG000002851_2 | MGYG000002851_2_17 | 20822 | 21532 | + | Metallophos | Metallophos_2 |
| TC | MGYG000002851_2 | MGYG000002851_2_18 | 21820 | 22527 | - | 1.C.82.1.1 |
Gene ID: MGYG000002851_2_4
Type: CAZyme
Location: 2639 - 4015 (-)
Type: CAZyme
Location: 2639 - 4015 (-)
Gene ID: MGYG000002851_2_5
Type: TC
Location: 4198 - 5394 (-)
Type: TC
Location: 4198 - 5394 (-)
Gene ID: MGYG000002851_2_6
Type: TC
Location: 5515 - 7875 (-)
Type: TC
Location: 5515 - 7875 (-)
Gene ID: MGYG000002851_2_7
Type: peptidase
Location: 8347 - 9246 (-)
Type: peptidase
Location: 8347 - 9246 (-)
Gene ID: MGYG000002851_2_8
Type: TC
Location: 9490 - 10053 (+)
Type: TC
Location: 9490 - 10053 (+)
Gene ID: MGYG000002851_2_9
Type: pfam
Location: 10235 - 11638 (+)
Type: pfam
Location: 10235 - 11638 (+)
Gene ID: MGYG000002851_2_10
Type:
Location: 11897 - 12682 (+)
Type:
Location: 11897 - 12682 (+)
Gene ID: MGYG000002851_2_11
Type: TC
Location: 12843 - 13823 (+)
Type: TC
Location: 12843 - 13823 (+)
Gene ID: MGYG000002851_2_12
Type: TC
Location: 14027 - 14950 (+)
Type: TC
Location: 14027 - 14950 (+)
Gene ID: MGYG000002851_2_13
Type: TC
Location: 14943 - 15737 (+)
Type: TC
Location: 14943 - 15737 (+)
Gene ID: MGYG000002851_2_14
Type: pfam
Location: 15896 - 17920 (+)
Type: pfam
Location: 15896 - 17920 (+)
Gene ID: MGYG000002851_2_15
Type: TC
Location: 18050 - 18817 (+)
Type: TC
Location: 18050 - 18817 (+)
Gene ID: MGYG000002851_2_16
Type: pfam
Location: 18909 - 20825 (+)
Type: pfam
Location: 18909 - 20825 (+)
Gene ID: MGYG000002851_2_17
Type: pfam
Location: 20822 - 21532 (+)
Type: pfam
Location: 20822 - 21532 (+)
Gene ID: MGYG000002851_2_18
Type: TC
Location: 21820 - 22527 (-)
Type: TC
Location: 21820 - 22527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002851_2_14 | vegan > omnivore | 1.96415 | 0.01287 |
| MGYG000002851_2_14 | vegetarian > omnivore | 1.41766 | 0.01560 |