Cluster: MGYG000002845_CGC10
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002845
- CGC Family ID: CGCFAM_10575
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002845_11 | MGYG000002845_11_34 | 37096 | 37926 | - | 3.A.1.132.3 |
| pfam | MGYG000002845_11 | MGYG000002845_11_35 | 37956 | 38333 | - | Ribonuc_L-PSP |
| pfam | MGYG000002845_11 | MGYG000002845_11_36 | 38336 | 39286 | - | Shikimate_DH | OCD_Mu_crystall |
| TC | MGYG000002845_11 | MGYG000002845_11_37 | 39289 | 40692 | - | 2.A.66.1.28 |
| pfam | MGYG000002845_11 | MGYG000002845_11_38 | 40661 | 41845 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TF | MGYG000002845_11 | MGYG000002845_11_39 | 42042 | 42497 | + | HTH_3 |
| CAZyme | MGYG000002845_11 | MGYG000002845_11_40 | 42616 | 44703 | + | GH13_11 |
| STP | MGYG000002845_11 | MGYG000002845_11_41 | 44745 | 45707 | - | PfkB |
| CAZyme | MGYG000002845_11 | MGYG000002845_11_42 | 45734 | 47221 | - | GH32 |
| CAZyme | MGYG000002845_11 | MGYG000002845_11_43 | 47242 | 48585 | - | GH172 |
| TC | MGYG000002845_11 | MGYG000002845_11_44 | 48609 | 49439 | - | 3.A.1.1.18 |
| TC | MGYG000002845_11 | MGYG000002845_11_45 | 49436 | 50320 | - | 3.A.1.1.20 |
| TC | MGYG000002845_11 | MGYG000002845_11_46 | 50394 | 51710 | - | 3.A.1.1.21 |
| TF | MGYG000002845_11 | MGYG000002845_11_47 | 51980 | 52954 | - | LacI |
| pfam | MGYG000002845_11 | MGYG000002845_11_48 | 53054 | 54241 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | MGYG000002845_11 | MGYG000002845_11_49 | 54407 | 56293 | - | 1.A.33.1.4 |
Gene ID: MGYG000002845_11_34
Type: TC
Location: 37096 - 37926 (-)
Type: TC
Location: 37096 - 37926 (-)
Gene ID: MGYG000002845_11_35
Type: pfam
Location: 37956 - 38333 (-)
Type: pfam
Location: 37956 - 38333 (-)
Gene ID: MGYG000002845_11_36
Type: pfam
Location: 38336 - 39286 (-)
Type: pfam
Location: 38336 - 39286 (-)
Gene ID: MGYG000002845_11_37
Type: TC
Location: 39289 - 40692 (-)
Type: TC
Location: 39289 - 40692 (-)
Gene ID: MGYG000002845_11_38
Type: pfam
Location: 40661 - 41845 (-)
Type: pfam
Location: 40661 - 41845 (-)
Gene ID: MGYG000002845_11_39
Type: TF
Location: 42042 - 42497 (+)
Type: TF
Location: 42042 - 42497 (+)
Gene ID: MGYG000002845_11_40
Type: CAZyme
Location: 42616 - 44703 (+)
Type: CAZyme
Location: 42616 - 44703 (+)
Gene ID: MGYG000002845_11_41
Type: STP
Location: 44745 - 45707 (-)
Type: STP
Location: 44745 - 45707 (-)
Gene ID: MGYG000002845_11_42
Type: CAZyme
Location: 45734 - 47221 (-)
Type: CAZyme
Location: 45734 - 47221 (-)
Gene ID: MGYG000002845_11_43
Type: CAZyme
Location: 47242 - 48585 (-)
Type: CAZyme
Location: 47242 - 48585 (-)
Gene ID: MGYG000002845_11_44
Type: TC
Location: 48609 - 49439 (-)
Type: TC
Location: 48609 - 49439 (-)
Gene ID: MGYG000002845_11_45
Type: TC
Location: 49436 - 50320 (-)
Type: TC
Location: 49436 - 50320 (-)
Gene ID: MGYG000002845_11_46
Type: TC
Location: 50394 - 51710 (-)
Type: TC
Location: 50394 - 51710 (-)
Gene ID: MGYG000002845_11_47
Type: TF
Location: 51980 - 52954 (-)
Type: TF
Location: 51980 - 52954 (-)
Gene ID: MGYG000002845_11_48
Type: pfam
Location: 53054 - 54241 (-)
Type: pfam
Location: 53054 - 54241 (-)
Gene ID: MGYG000002845_11_49
Type: TC
Location: 54407 - 56293 (-)
Type: TC
Location: 54407 - 56293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.