Cluster: MGYG000002844_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002844
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002844_3 | MGYG000002844_3_34 | 42224 | 44992 | - | 3.A.3.4.1 |
| STP | MGYG000002844_3 | MGYG000002844_3_35 | 45431 | 46114 | + | Pribosyltran |
| TF | MGYG000002844_3 | MGYG000002844_3_36 | 46372 | 47226 | - | HTH_6 |
| CAZyme | MGYG000002844_3 | MGYG000002844_3_37 | 47269 | 49869 | - | GH106 |
| TF | MGYG000002844_3 | MGYG000002844_3_38 | 49986 | 50993 | + | HTH_AraC |
| CAZyme | MGYG000002844_3 | MGYG000002844_3_39 | 51166 | 52614 | + | GH1 |
| TC | MGYG000002844_3 | MGYG000002844_3_40 | 52882 | 53418 | + | 4.A.1.2.6 |
Gene ID: MGYG000002844_3_34
Type: TC
Location: 42224 - 44992 (-)
Type: TC
Location: 42224 - 44992 (-)
Gene ID: MGYG000002844_3_35
Type: STP
Location: 45431 - 46114 (+)
Type: STP
Location: 45431 - 46114 (+)
Gene ID: MGYG000002844_3_36
Type: TF
Location: 46372 - 47226 (-)
Type: TF
Location: 46372 - 47226 (-)
Gene ID: MGYG000002844_3_37
Type: CAZyme
Location: 47269 - 49869 (-)
Type: CAZyme
Location: 47269 - 49869 (-)
Gene ID: MGYG000002844_3_38
Type: TF
Location: 49986 - 50993 (+)
Type: TF
Location: 49986 - 50993 (+)
Gene ID: MGYG000002844_3_39
Type: CAZyme
Location: 51166 - 52614 (+)
Type: CAZyme
Location: 51166 - 52614 (+)
Gene ID: MGYG000002844_3_40
Type: TC
Location: 52882 - 53418 (+)
Type: TC
Location: 52882 - 53418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.