Cluster: MGYG000002844_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002844
- CGC Family ID: CGCFAM_00486
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002844_34 | MGYG000002844_34_4 | 2363 | 2791 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000002844_34 | MGYG000002844_34_5 | 2872 | 3495 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002844_34 | MGYG000002844_34_6 | 3684 | 4523 | - | 4.A.6.1.18 |
| TC | MGYG000002844_34 | MGYG000002844_34_7 | 4513 | 5397 | - | 4.A.6.1.18 |
| TC | MGYG000002844_34 | MGYG000002844_34_8 | 5491 | 5955 | - | 4.A.6.1.18 |
| CAZyme | MGYG000002844_34 | MGYG000002844_34_9 | 5958 | 7754 | - | GH35 |
| TC | MGYG000002844_34 | MGYG000002844_34_10 | 8167 | 8649 | - | 4.A.6.1.5 |
Gene ID: MGYG000002844_34_4
Type: TC
Location: 2363 - 2791 (-)
Type: TC
Location: 2363 - 2791 (-)
Gene ID: MGYG000002844_34_5
Type:
Location: 2872 - 3495 (-)
Type:
Location: 2872 - 3495 (-)
Gene ID: MGYG000002844_34_6
Type: TC
Location: 3684 - 4523 (-)
Type: TC
Location: 3684 - 4523 (-)
Gene ID: MGYG000002844_34_7
Type: TC
Location: 4513 - 5397 (-)
Type: TC
Location: 4513 - 5397 (-)
Gene ID: MGYG000002844_34_8
Type: TC
Location: 5491 - 5955 (-)
Type: TC
Location: 5491 - 5955 (-)
Gene ID: MGYG000002844_34_9
Type: CAZyme
Location: 5958 - 7754 (-)
Type: CAZyme
Location: 5958 - 7754 (-)
Gene ID: MGYG000002844_34_10
Type: TC
Location: 8167 - 8649 (-)
Type: TC
Location: 8167 - 8649 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002844_34_6 | vegetarian > vegan | 2.25376 | 0.02827 |
| MGYG000002844_34_8 | vegetarian > vegan | 3.24251 | 0.01433 |
| MGYG000002844_34_9 | vegetarian > vegan | 2.62256 | 0.02827 |