Cluster: MGYG000002839_CGC17
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002839
- CGC Family ID: CGCFAM_06336
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002839_15 | MGYG000002839_15_2 | 1218 | 2138 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_3 | 2157 | 3119 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_4 | 3122 | 4066 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_5 | 4066 | 5067 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_6 | 5380 | 7158 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_7 | 7354 | 9141 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_8 | 9391 | 11184 | - | 3.A.1.5.32 |
| TC | MGYG000002839_15 | MGYG000002839_15_9 | 11471 | 11710 | - | 3.D.1.6.4 |
| TC | MGYG000002839_15 | MGYG000002839_15_10 | 11894 | 12787 | - | 3.A.1.5.19 |
| TC | MGYG000002839_15 | MGYG000002839_15_11 | 12780 | 13826 | - | 3.A.1.5.19 |
| TC | MGYG000002839_15 | MGYG000002839_15_12 | 13837 | 14829 | - | 3.A.1.5.19 |
| TC | MGYG000002839_15 | MGYG000002839_15_13 | 14829 | 15773 | - | 3.A.1.5.19 |
| pfam | MGYG000002839_15 | MGYG000002839_15_14 | 15919 | 16239 | + | DUF3899 |
| pfam | MGYG000002839_15 | MGYG000002839_15_15 | 16283 | 16579 | - | DUF2129 |
| TC | MGYG000002839_15 | MGYG000002839_15_16 | 16592 | 17812 | - | 2.A.103.1.1 |
| pfam | MGYG000002839_15 | MGYG000002839_15_17 | 17825 | 18097 | - | DUF1507 |
| pfam | MGYG000002839_15 | MGYG000002839_15_18 | 18641 | 20836 | - | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region |
| TC | MGYG000002839_15 | MGYG000002839_15_19 | 20952 | 22415 | - | 2.A.40.7.6 |
| NULL(UNKNOWN) | MGYG000002839_15 | MGYG000002839_15_20 | 22640 | 23434 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002839_15 | MGYG000002839_15_21 | 23549 | 24403 | - | 3.A.1.24.2 |
| pfam | MGYG000002839_15 | MGYG000002839_15_22 | 24911 | 25861 | - | Rotamase | Rotamase_2 | Rotamase_3 |
| CAZyme | MGYG000002839_15 | MGYG000002839_15_23 | 26041 | 26856 | - | CBM50 |
| NULL(UNKNOWN) | MGYG000002839_15 | MGYG000002839_15_24 | 27000 | 27203 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002839_15 | MGYG000002839_15_25 | 27251 | 28861 | - | 3.A.1.106.5 |
| pfam | MGYG000002839_15 | MGYG000002839_15_26 | 29016 | 30131 | - | Radical_SAM | RlmN_N |
| pfam | MGYG000002839_15 | MGYG000002839_15_27 | 30147 | 31073 | - | Asparaginase | Asparaginase_C |
| TC | MGYG000002839_15 | MGYG000002839_15_28 | 32096 | 33508 | - | 3.A.1.121.2 |
| pfam | MGYG000002839_15 | MGYG000002839_15_29 | 33537 | 34337 | - | ABC2_membrane | ABC2_membrane_3 |
| TC | MGYG000002839_15 | MGYG000002839_15_30 | 34358 | 35242 | - | 3.A.1.105.6 |
Gene ID: MGYG000002839_15_2
Type: TC
Location: 1218 - 2138 (-)
Type: TC
Location: 1218 - 2138 (-)
Gene ID: MGYG000002839_15_3
Type: TC
Location: 2157 - 3119 (-)
Type: TC
Location: 2157 - 3119 (-)
Gene ID: MGYG000002839_15_4
Type: TC
Location: 3122 - 4066 (-)
Type: TC
Location: 3122 - 4066 (-)
Gene ID: MGYG000002839_15_5
Type: TC
Location: 4066 - 5067 (-)
Type: TC
Location: 4066 - 5067 (-)
Gene ID: MGYG000002839_15_6
Type: TC
Location: 5380 - 7158 (-)
Type: TC
Location: 5380 - 7158 (-)
Gene ID: MGYG000002839_15_7
Type: TC
Location: 7354 - 9141 (-)
Type: TC
Location: 7354 - 9141 (-)
Gene ID: MGYG000002839_15_8
Type: TC
Location: 9391 - 11184 (-)
Type: TC
Location: 9391 - 11184 (-)
Gene ID: MGYG000002839_15_9
Type: TC
Location: 11471 - 11710 (-)
Type: TC
Location: 11471 - 11710 (-)
Gene ID: MGYG000002839_15_10
Type: TC
Location: 11894 - 12787 (-)
Type: TC
Location: 11894 - 12787 (-)
Gene ID: MGYG000002839_15_11
Type: TC
Location: 12780 - 13826 (-)
Type: TC
Location: 12780 - 13826 (-)
Gene ID: MGYG000002839_15_12
Type: TC
Location: 13837 - 14829 (-)
Type: TC
Location: 13837 - 14829 (-)
Gene ID: MGYG000002839_15_13
Type: TC
Location: 14829 - 15773 (-)
Type: TC
Location: 14829 - 15773 (-)
Gene ID: MGYG000002839_15_14
Type: pfam
Location: 15919 - 16239 (+)
Type: pfam
Location: 15919 - 16239 (+)
Gene ID: MGYG000002839_15_15
Type: pfam
Location: 16283 - 16579 (-)
Type: pfam
Location: 16283 - 16579 (-)
Gene ID: MGYG000002839_15_16
Type: TC
Location: 16592 - 17812 (-)
Type: TC
Location: 16592 - 17812 (-)
Gene ID: MGYG000002839_15_17
Type: pfam
Location: 17825 - 18097 (-)
Type: pfam
Location: 17825 - 18097 (-)
Gene ID: MGYG000002839_15_18
Type: pfam
Location: 18641 - 20836 (-)
Type: pfam
Location: 18641 - 20836 (-)
Gene ID: MGYG000002839_15_19
Type: TC
Location: 20952 - 22415 (-)
Type: TC
Location: 20952 - 22415 (-)
Gene ID: MGYG000002839_15_20
Type:
Location: 22640 - 23434 (-)
Type:
Location: 22640 - 23434 (-)
Gene ID: MGYG000002839_15_21
Type: TC
Location: 23549 - 24403 (-)
Type: TC
Location: 23549 - 24403 (-)
Gene ID: MGYG000002839_15_22
Type: pfam
Location: 24911 - 25861 (-)
Type: pfam
Location: 24911 - 25861 (-)
Gene ID: MGYG000002839_15_23
Type: CAZyme
Location: 26041 - 26856 (-)
Type: CAZyme
Location: 26041 - 26856 (-)
Gene ID: MGYG000002839_15_24
Type:
Location: 27000 - 27203 (-)
Type:
Location: 27000 - 27203 (-)
Gene ID: MGYG000002839_15_25
Type: TC
Location: 27251 - 28861 (-)
Type: TC
Location: 27251 - 28861 (-)
Gene ID: MGYG000002839_15_26
Type: pfam
Location: 29016 - 30131 (-)
Type: pfam
Location: 29016 - 30131 (-)
Gene ID: MGYG000002839_15_27
Type: pfam
Location: 30147 - 31073 (-)
Type: pfam
Location: 30147 - 31073 (-)
Gene ID: MGYG000002839_15_28
Type: TC
Location: 32096 - 33508 (-)
Type: TC
Location: 32096 - 33508 (-)
Gene ID: MGYG000002839_15_29
Type: pfam
Location: 33537 - 34337 (-)
Type: pfam
Location: 33537 - 34337 (-)
Gene ID: MGYG000002839_15_30
Type: TC
Location: 34358 - 35242 (-)
Type: TC
Location: 34358 - 35242 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Aerococcaceae
Genus
Granulicatella
Species
Granulicatella sp902479935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.