Cluster: MGYG000002836_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002836
- CGC Family ID: CGCFAM_03204
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002836_9 | MGYG000002836_9_5 | 4428 | 5162 | + | 3.A.1.128.3 |
| pfam | MGYG000002836_9 | MGYG000002836_9_6 | 5149 | 6735 | + | ABC_export |
| pfam | MGYG000002836_9 | MGYG000002836_9_7 | 6817 | 8136 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | MGYG000002836_9 | MGYG000002836_9_8 | 8160 | 11549 | + | CE4 |
| CAZyme | MGYG000002836_9 | MGYG000002836_9_9 | 11603 | 13525 | + | GT2 |
| NULL(UNKNOWN) | MGYG000002836_9 | MGYG000002836_9_10 | 13503 | 15344 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002836_9 | MGYG000002836_9_11 | 15542 | 16609 | + | GH18 |
Gene ID: MGYG000002836_9_5
Type: TC
Location: 4428 - 5162 (+)
Type: TC
Location: 4428 - 5162 (+)
Gene ID: MGYG000002836_9_6
Type: pfam
Location: 5149 - 6735 (+)
Type: pfam
Location: 5149 - 6735 (+)
Gene ID: MGYG000002836_9_7
Type: pfam
Location: 6817 - 8136 (+)
Type: pfam
Location: 6817 - 8136 (+)
Gene ID: MGYG000002836_9_8
Type: CAZyme
Location: 8160 - 11549 (+)
Type: CAZyme
Location: 8160 - 11549 (+)
Gene ID: MGYG000002836_9_9
Type: CAZyme
Location: 11603 - 13525 (+)
Type: CAZyme
Location: 11603 - 13525 (+)
Gene ID: MGYG000002836_9_10
Type:
Location: 13503 - 15344 (+)
Type:
Location: 13503 - 15344 (+)
Gene ID: MGYG000002836_9_11
Type: CAZyme
Location: 15542 - 16609 (+)
Type: CAZyme
Location: 15542 - 16609 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerocolumna
Species
Anaerocolumna aminovalerica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.