Cluster: MGYG000002836_CGC18
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002836
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002836_4 | MGYG000002836_4_133 | 156018 | 156725 | - | 3.A.1.4.10 |
| TC | MGYG000002836_4 | MGYG000002836_4_134 | 156709 | 157488 | - | 3.A.1.4.10 |
| TC | MGYG000002836_4 | MGYG000002836_4_135 | 157551 | 158597 | - | 3.A.1.4.8 |
| TC | MGYG000002836_4 | MGYG000002836_4_136 | 158602 | 159339 | - | 3.A.1.4.10 |
| TC | MGYG000002836_4 | MGYG000002836_4_137 | 159641 | 160798 | - | 3.A.1.4.8 |
| pfam | MGYG000002836_4 | MGYG000002836_4_138 | 160862 | 162142 | - | SDH_alpha |
| TC | MGYG000002836_4 | MGYG000002836_4_139 | 162702 | 164420 | - | 1.B.52.2.1 |
| pfam | MGYG000002836_4 | MGYG000002836_4_140 | 164829 | 165755 | - | Transket_pyr | Transketolase_C |
| pfam | MGYG000002836_4 | MGYG000002836_4_141 | 165743 | 166588 | - | Transketolase_N | E1_dh | TPP_enzyme_C | DXP_synthase_N |
| TC | MGYG000002836_4 | MGYG000002836_4_142 | 166650 | 167366 | - | 3.A.1.4.10 |
| TC | MGYG000002836_4 | MGYG000002836_4_143 | 167359 | 168120 | - | 3.A.1.4.10 |
| TC | MGYG000002836_4 | MGYG000002836_4_144 | 168113 | 169111 | - | 3.A.1.4.9 |
| TC | MGYG000002836_4 | MGYG000002836_4_145 | 169112 | 169981 | - | 3.A.1.4.1 |
| TC | MGYG000002836_4 | MGYG000002836_4_146 | 170159 | 171391 | - | 3.A.1.4.11 |
| TC | MGYG000002836_4 | MGYG000002836_4_147 | 171841 | 173619 | + | 8.A.59.2.1 |
| TF | MGYG000002836_4 | MGYG000002836_4_148 | 173600 | 175150 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000002836_4 | MGYG000002836_4_149 | 175455 | 177353 | - | GH13_21 |
| TC | MGYG000002836_4 | MGYG000002836_4_150 | 177408 | 178283 | - | 3.A.1.1.9 |
| TC | MGYG000002836_4 | MGYG000002836_4_151 | 178295 | 179185 | - | 3.A.1.1.9 |
| TC | MGYG000002836_4 | MGYG000002836_4_152 | 179282 | 181039 | - | 3.A.1.1.9 |
| TF | MGYG000002836_4 | MGYG000002836_4_153 | 181453 | 182478 | + | LacI |
| pfam | MGYG000002836_4 | MGYG000002836_4_154 | 182995 | 184020 | - | Oxidored_FMN |
| TC | MGYG000002836_4 | MGYG000002836_4_155 | 184048 | 184983 | - | 1.A.35.3.2 |
| pfam | MGYG000002836_4 | MGYG000002836_4_156 | 185167 | 185925 | - | CpsB_CapC |
| TC | MGYG000002836_4 | MGYG000002836_4_157 | 186264 | 188015 | - | 1.B.52.2.1 |
| TC | MGYG000002836_4 | MGYG000002836_4_158 | 188180 | 189892 | - | 1.B.52.2.2 |
| TC | MGYG000002836_4 | MGYG000002836_4_159 | 190184 | 191896 | - | 1.B.52.2.1 |
Gene ID: MGYG000002836_4_133
Type: TC
Location: 156018 - 156725 (-)
Type: TC
Location: 156018 - 156725 (-)
Gene ID: MGYG000002836_4_134
Type: TC
Location: 156709 - 157488 (-)
Type: TC
Location: 156709 - 157488 (-)
Gene ID: MGYG000002836_4_135
Type: TC
Location: 157551 - 158597 (-)
Type: TC
Location: 157551 - 158597 (-)
Gene ID: MGYG000002836_4_136
Type: TC
Location: 158602 - 159339 (-)
Type: TC
Location: 158602 - 159339 (-)
Gene ID: MGYG000002836_4_137
Type: TC
Location: 159641 - 160798 (-)
Type: TC
Location: 159641 - 160798 (-)
Gene ID: MGYG000002836_4_138
Type: pfam
Location: 160862 - 162142 (-)
Type: pfam
Location: 160862 - 162142 (-)
Gene ID: MGYG000002836_4_139
Type: TC
Location: 162702 - 164420 (-)
Type: TC
Location: 162702 - 164420 (-)
Gene ID: MGYG000002836_4_140
Type: pfam
Location: 164829 - 165755 (-)
Type: pfam
Location: 164829 - 165755 (-)
Gene ID: MGYG000002836_4_141
Type: pfam
Location: 165743 - 166588 (-)
Type: pfam
Location: 165743 - 166588 (-)
Gene ID: MGYG000002836_4_142
Type: TC
Location: 166650 - 167366 (-)
Type: TC
Location: 166650 - 167366 (-)
Gene ID: MGYG000002836_4_143
Type: TC
Location: 167359 - 168120 (-)
Type: TC
Location: 167359 - 168120 (-)
Gene ID: MGYG000002836_4_144
Type: TC
Location: 168113 - 169111 (-)
Type: TC
Location: 168113 - 169111 (-)
Gene ID: MGYG000002836_4_145
Type: TC
Location: 169112 - 169981 (-)
Type: TC
Location: 169112 - 169981 (-)
Gene ID: MGYG000002836_4_146
Type: TC
Location: 170159 - 171391 (-)
Type: TC
Location: 170159 - 171391 (-)
Gene ID: MGYG000002836_4_147
Type: TC
Location: 171841 - 173619 (+)
Type: TC
Location: 171841 - 173619 (+)
Gene ID: MGYG000002836_4_148
Type: TF
Location: 173600 - 175150 (+)
Type: TF
Location: 173600 - 175150 (+)
Gene ID: MGYG000002836_4_149
Type: CAZyme
Location: 175455 - 177353 (-)
Type: CAZyme
Location: 175455 - 177353 (-)
Gene ID: MGYG000002836_4_150
Type: TC
Location: 177408 - 178283 (-)
Type: TC
Location: 177408 - 178283 (-)
Gene ID: MGYG000002836_4_151
Type: TC
Location: 178295 - 179185 (-)
Type: TC
Location: 178295 - 179185 (-)
Gene ID: MGYG000002836_4_152
Type: TC
Location: 179282 - 181039 (-)
Type: TC
Location: 179282 - 181039 (-)
Gene ID: MGYG000002836_4_153
Type: TF
Location: 181453 - 182478 (+)
Type: TF
Location: 181453 - 182478 (+)
Gene ID: MGYG000002836_4_154
Type: pfam
Location: 182995 - 184020 (-)
Type: pfam
Location: 182995 - 184020 (-)
Gene ID: MGYG000002836_4_155
Type: TC
Location: 184048 - 184983 (-)
Type: TC
Location: 184048 - 184983 (-)
Gene ID: MGYG000002836_4_156
Type: pfam
Location: 185167 - 185925 (-)
Type: pfam
Location: 185167 - 185925 (-)
Gene ID: MGYG000002836_4_157
Type: TC
Location: 186264 - 188015 (-)
Type: TC
Location: 186264 - 188015 (-)
Gene ID: MGYG000002836_4_158
Type: TC
Location: 188180 - 189892 (-)
Type: TC
Location: 188180 - 189892 (-)
Gene ID: MGYG000002836_4_159
Type: TC
Location: 190184 - 191896 (-)
Type: TC
Location: 190184 - 191896 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerocolumna
Species
Anaerocolumna aminovalerica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.