Cluster: MGYG000002824_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002824
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002824_76 | MGYG000002824_76_3 | 3222 | 4676 | - | GH1 |
| TC | MGYG000002824_76 | MGYG000002824_76_4 | 4678 | 5931 | - | 4.A.3.2.6 |
| TC | MGYG000002824_76 | MGYG000002824_76_5 | 6036 | 6329 | - | 4.A.3.2.6 |
| TC | MGYG000002824_76 | MGYG000002824_76_6 | 6376 | 6702 | - | 4.A.3.2.7 |
Gene ID: MGYG000002824_76_3
Type: CAZyme
Location: 3222 - 4676 (-)
Type: CAZyme
Location: 3222 - 4676 (-)
Gene ID: MGYG000002824_76_4
Type: TC
Location: 4678 - 5931 (-)
Type: TC
Location: 4678 - 5931 (-)
Gene ID: MGYG000002824_76_5
Type: TC
Location: 6036 - 6329 (-)
Type: TC
Location: 6036 - 6329 (-)
Gene ID: MGYG000002824_76_6
Type: TC
Location: 6376 - 6702 (-)
Type: TC
Location: 6376 - 6702 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002824_76_3 | vegetarian > vegan | 2.06439 | 0.00573 |
| MGYG000002824_76_4 | vegetarian > vegan | 1.68022 | 0.00573 |
| MGYG000002824_76_5 | vegetarian > vegan | 2.06477 | 0.00573 |
| MGYG000002824_76_6 | vegetarian > vegan | 1.33922 | 0.00573 |