Cluster: MGYG000002789_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000002789
- CGC Family ID: CGCFAM_00015
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002789_1 | MGYG000002789_1_88 | 102290 | 103048 | + | 8.A.3.2.3 |
| TC | MGYG000002789_1 | MGYG000002789_1_89 | 103045 | 103701 | + | 8.A.3.2.2 |
| STP | MGYG000002789_1 | MGYG000002789_1_90 | 103726 | 104886 | + | Aminotran_1_2 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_91 | 104915 | 106009 | + | GT4 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_92 | 106009 | 106815 | + | GT2 |
| TC | MGYG000002789_1 | MGYG000002789_1_93 | 106832 | 107986 | + | 9.B.183.1.9 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_94 | 107983 | 109101 | + | GT4 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_95 | 109098 | 109967 | + | GT14 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_96 | 109977 | 110990 | + | GT2 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_97 | 110992 | 111960 | + | GT8 |
| CAZyme | MGYG000002789_1 | MGYG000002789_1_98 | 111957 | 113120 | + | GT2 |
| pfam | MGYG000002789_1 | MGYG000002789_1_99 | 113133 | 114197 | + | PS_pyruv_trans |
| TC | MGYG000002789_1 | MGYG000002789_1_100 | 114219 | 115784 | + | 2.A.66.1.40 |
| TC | MGYG000002789_1 | MGYG000002789_1_101 | 115781 | 116404 | + | 9.B.18.1.2 |
Gene ID: MGYG000002789_1_88
Type: TC
Location: 102290 - 103048 (+)
Type: TC
Location: 102290 - 103048 (+)
Gene ID: MGYG000002789_1_89
Type: TC
Location: 103045 - 103701 (+)
Type: TC
Location: 103045 - 103701 (+)
Gene ID: MGYG000002789_1_90
Type: STP
Location: 103726 - 104886 (+)
Type: STP
Location: 103726 - 104886 (+)
Gene ID: MGYG000002789_1_91
Type: CAZyme
Location: 104915 - 106009 (+)
Type: CAZyme
Location: 104915 - 106009 (+)
Gene ID: MGYG000002789_1_92
Type: CAZyme
Location: 106009 - 106815 (+)
Type: CAZyme
Location: 106009 - 106815 (+)
Gene ID: MGYG000002789_1_93
Type: TC
Location: 106832 - 107986 (+)
Type: TC
Location: 106832 - 107986 (+)
Gene ID: MGYG000002789_1_94
Type: CAZyme
Location: 107983 - 109101 (+)
Type: CAZyme
Location: 107983 - 109101 (+)
Gene ID: MGYG000002789_1_95
Type: CAZyme
Location: 109098 - 109967 (+)
Type: CAZyme
Location: 109098 - 109967 (+)
Gene ID: MGYG000002789_1_96
Type: CAZyme
Location: 109977 - 110990 (+)
Type: CAZyme
Location: 109977 - 110990 (+)
Gene ID: MGYG000002789_1_97
Type: CAZyme
Location: 110992 - 111960 (+)
Type: CAZyme
Location: 110992 - 111960 (+)
Gene ID: MGYG000002789_1_98
Type: CAZyme
Location: 111957 - 113120 (+)
Type: CAZyme
Location: 111957 - 113120 (+)
Gene ID: MGYG000002789_1_99
Type: pfam
Location: 113133 - 114197 (+)
Type: pfam
Location: 113133 - 114197 (+)
Gene ID: MGYG000002789_1_100
Type: TC
Location: 114219 - 115784 (+)
Type: TC
Location: 114219 - 115784 (+)
Gene ID: MGYG000002789_1_101
Type: TC
Location: 115781 - 116404 (+)
Type: TC
Location: 115781 - 116404 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lapidilactobacillus
Species
Lapidilactobacillus dextrinicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.