Cluster: MGYG000002775_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002775
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002775_22 | MGYG000002775_22_6 | 4773 | 5111 | - | 4.A.3.1.2 |
| TF | MGYG000002775_22 | MGYG000002775_22_7 | 5326 | 6330 | - | LacI |
| TC | MGYG000002775_22 | MGYG000002775_22_8 | 6688 | 8454 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002775_22 | MGYG000002775_22_9 | 8521 | 9960 | + | GH1 |
| TF | MGYG000002775_22 | MGYG000002775_22_10 | 10300 | 11310 | - | LacI |
| TC | MGYG000002775_22 | MGYG000002775_22_11 | 11563 | 13341 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002775_22 | MGYG000002775_22_12 | 13418 | 14839 | + | GH1 |
| pfam | MGYG000002775_22 | MGYG000002775_22_13 | 15208 | 16440 | + | Fic |
| STP | MGYG000002775_22 | MGYG000002775_22_14 | 16437 | 16817 | - | DeoRC |
| TC | MGYG000002775_22 | MGYG000002775_22_15 | 16980 | 18674 | - | 4.A.3.1.1 |
Gene ID: MGYG000002775_22_6
Type: TC
Location: 4773 - 5111 (-)
Type: TC
Location: 4773 - 5111 (-)
Gene ID: MGYG000002775_22_7
Type: TF
Location: 5326 - 6330 (-)
Type: TF
Location: 5326 - 6330 (-)
Gene ID: MGYG000002775_22_8
Type: TC
Location: 6688 - 8454 (+)
Type: TC
Location: 6688 - 8454 (+)
Gene ID: MGYG000002775_22_9
Type: CAZyme
Location: 8521 - 9960 (+)
Type: CAZyme
Location: 8521 - 9960 (+)
Gene ID: MGYG000002775_22_10
Type: TF
Location: 10300 - 11310 (-)
Type: TF
Location: 10300 - 11310 (-)
Gene ID: MGYG000002775_22_11
Type: TC
Location: 11563 - 13341 (+)
Type: TC
Location: 11563 - 13341 (+)
Gene ID: MGYG000002775_22_12
Type: CAZyme
Location: 13418 - 14839 (+)
Type: CAZyme
Location: 13418 - 14839 (+)
Gene ID: MGYG000002775_22_13
Type: pfam
Location: 15208 - 16440 (+)
Type: pfam
Location: 15208 - 16440 (+)
Gene ID: MGYG000002775_22_14
Type: STP
Location: 16437 - 16817 (-)
Type: STP
Location: 16437 - 16817 (-)
Gene ID: MGYG000002775_22_15
Type: TC
Location: 16980 - 18674 (-)
Type: TC
Location: 16980 - 18674 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.