Cluster: MGYG000002760_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002760
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002760_26 | MGYG000002760_26_14 | 14324 | 15766 | + | 3.A.1.8.1 |
| TC | MGYG000002760_26 | MGYG000002760_26_15 | 15770 | 16840 | + | 3.A.1.1.3 |
| pfam | MGYG000002760_26 | MGYG000002760_26_16 | 17270 | 18553 | + | HGD-D |
| TC | MGYG000002760_26 | MGYG000002760_26_17 | 18738 | 20348 | + | 3.A.1.5.11 |
| TC | MGYG000002760_26 | MGYG000002760_26_18 | 20437 | 21390 | + | 3.A.1.5.39 |
| TC | MGYG000002760_26 | MGYG000002760_26_19 | 21387 | 22217 | + | 3.A.1.5.39 |
| TC | MGYG000002760_26 | MGYG000002760_26_20 | 22221 | 23216 | + | 3.A.1.5.37 |
| TC | MGYG000002760_26 | MGYG000002760_26_21 | 23206 | 23991 | + | 3.A.1.5.36 |
| pfam | MGYG000002760_26 | MGYG000002760_26_22 | 24068 | 25231 | + | HGD-D |
| pfam | MGYG000002760_26 | MGYG000002760_26_23 | 25287 | 25832 | + | C_GCAxxG_C_C |
| TC | MGYG000002760_26 | MGYG000002760_26_24 | 25901 | 26815 | + | 2.A.16.6.1 |
| pfam | MGYG000002760_26 | MGYG000002760_26_25 | 26864 | 27628 | + | BcrAD_BadFG |
| CAZyme | MGYG000002760_26 | MGYG000002760_26_26 | 27643 | 28860 | + | GT4 |
Gene ID: MGYG000002760_26_14
Type: TC
Location: 14324 - 15766 (+)
Type: TC
Location: 14324 - 15766 (+)
Gene ID: MGYG000002760_26_15
Type: TC
Location: 15770 - 16840 (+)
Type: TC
Location: 15770 - 16840 (+)
Gene ID: MGYG000002760_26_16
Type: pfam
Location: 17270 - 18553 (+)
Type: pfam
Location: 17270 - 18553 (+)
Gene ID: MGYG000002760_26_17
Type: TC
Location: 18738 - 20348 (+)
Type: TC
Location: 18738 - 20348 (+)
Gene ID: MGYG000002760_26_18
Type: TC
Location: 20437 - 21390 (+)
Type: TC
Location: 20437 - 21390 (+)
Gene ID: MGYG000002760_26_19
Type: TC
Location: 21387 - 22217 (+)
Type: TC
Location: 21387 - 22217 (+)
Gene ID: MGYG000002760_26_20
Type: TC
Location: 22221 - 23216 (+)
Type: TC
Location: 22221 - 23216 (+)
Gene ID: MGYG000002760_26_21
Type: TC
Location: 23206 - 23991 (+)
Type: TC
Location: 23206 - 23991 (+)
Gene ID: MGYG000002760_26_22
Type: pfam
Location: 24068 - 25231 (+)
Type: pfam
Location: 24068 - 25231 (+)
Gene ID: MGYG000002760_26_23
Type: pfam
Location: 25287 - 25832 (+)
Type: pfam
Location: 25287 - 25832 (+)
Gene ID: MGYG000002760_26_24
Type: TC
Location: 25901 - 26815 (+)
Type: TC
Location: 25901 - 26815 (+)
Gene ID: MGYG000002760_26_25
Type: pfam
Location: 26864 - 27628 (+)
Type: pfam
Location: 26864 - 27628 (+)
Gene ID: MGYG000002760_26_26
Type: CAZyme
Location: 27643 - 28860 (+)
Type: CAZyme
Location: 27643 - 28860 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AL
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002760_26_17 | vegan > omnivore | 3.10852 | 0.01057 |
| MGYG000002760_26_18 | vegan > omnivore | 2.54685 | 0.01057 |
| MGYG000002760_26_18 | vegetarian > omnivore | 1.12911 | 0.01882 |
| MGYG000002760_26_19 | vegan > omnivore | 2.64721 | 0.01057 |
| MGYG000002760_26_19 | vegetarian > omnivore | 1.15664 | 0.01882 |
| MGYG000002760_26_21 | vegan > omnivore | 2.64469 | 0.01057 |
| MGYG000002760_26_26 | vegan > omnivore | 1.55843 | 0.01057 |