Cluster: MGYG000002752_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002752
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002752_19 | MGYG000002752_19_14 | 11856 | 13073 | - | GT4 |
| pfam | MGYG000002752_19 | MGYG000002752_19_15 | 13088 | 13852 | - | BcrAD_BadFG |
| pfam | MGYG000002752_19 | MGYG000002752_19_16 | 14008 | 15171 | - | HGD-D |
| TC | MGYG000002752_19 | MGYG000002752_19_17 | 15248 | 16033 | - | 3.A.1.5.36 |
| TC | MGYG000002752_19 | MGYG000002752_19_18 | 16023 | 17018 | - | 3.A.1.5.37 |
| TC | MGYG000002752_19 | MGYG000002752_19_19 | 17022 | 17852 | - | 3.A.1.5.39 |
| TC | MGYG000002752_19 | MGYG000002752_19_20 | 17849 | 18802 | - | 3.A.1.5.39 |
| TC | MGYG000002752_19 | MGYG000002752_19_21 | 18891 | 20501 | - | 3.A.1.5.11 |
| pfam | MGYG000002752_19 | MGYG000002752_19_22 | 20686 | 21969 | - | HGD-D |
| TC | MGYG000002752_19 | MGYG000002752_19_23 | 22414 | 23484 | - | 3.A.1.1.3 |
| TC | MGYG000002752_19 | MGYG000002752_19_24 | 23488 | 24930 | - | 3.A.1.8.1 |
Gene ID: MGYG000002752_19_14
Type: CAZyme
Location: 11856 - 13073 (-)
Type: CAZyme
Location: 11856 - 13073 (-)
Gene ID: MGYG000002752_19_15
Type: pfam
Location: 13088 - 13852 (-)
Type: pfam
Location: 13088 - 13852 (-)
Gene ID: MGYG000002752_19_16
Type: pfam
Location: 14008 - 15171 (-)
Type: pfam
Location: 14008 - 15171 (-)
Gene ID: MGYG000002752_19_17
Type: TC
Location: 15248 - 16033 (-)
Type: TC
Location: 15248 - 16033 (-)
Gene ID: MGYG000002752_19_18
Type: TC
Location: 16023 - 17018 (-)
Type: TC
Location: 16023 - 17018 (-)
Gene ID: MGYG000002752_19_19
Type: TC
Location: 17022 - 17852 (-)
Type: TC
Location: 17022 - 17852 (-)
Gene ID: MGYG000002752_19_20
Type: TC
Location: 17849 - 18802 (-)
Type: TC
Location: 17849 - 18802 (-)
Gene ID: MGYG000002752_19_21
Type: TC
Location: 18891 - 20501 (-)
Type: TC
Location: 18891 - 20501 (-)
Gene ID: MGYG000002752_19_22
Type: pfam
Location: 20686 - 21969 (-)
Type: pfam
Location: 20686 - 21969 (-)
Gene ID: MGYG000002752_19_23
Type: TC
Location: 22414 - 23484 (-)
Type: TC
Location: 22414 - 23484 (-)
Gene ID: MGYG000002752_19_24
Type: TC
Location: 23488 - 24930 (-)
Type: TC
Location: 23488 - 24930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900556605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002752_19_14 | vegan > omnivore | 1.53170 | 0.01057 |
| MGYG000002752_19_17 | vegan > omnivore | 2.84976 | 0.01057 |
| MGYG000002752_19_18 | vegan > omnivore | 1.70817 | 0.01057 |
| MGYG000002752_19_19 | vegan > omnivore | 2.94463 | 0.01057 |
| MGYG000002752_19_19 | vegetarian > omnivore | 1.08982 | 0.04212 |
| MGYG000002752_19_20 | vegan > omnivore | 2.74816 | 0.01057 |
| MGYG000002752_19_20 | vegetarian > omnivore | 1.05025 | 0.04212 |
| MGYG000002752_19_21 | vegan > omnivore | 3.32942 | 0.01057 |