Cluster: MGYG000002742_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002742
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002742_29 | MGYG000002742_29_12 | 9516 | 10685 | - | CE9 |
| STP | MGYG000002742_29 | MGYG000002742_29_13 | 10802 | 11968 | - | SIS | SIS |
| TF | MGYG000002742_29 | MGYG000002742_29_14 | 12080 | 12814 | - | GntR |
| TC | MGYG000002742_29 | MGYG000002742_29_15 | 12902 | 13330 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000002742_29 | MGYG000002742_29_16 | 13412 | 14035 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002742_29 | MGYG000002742_29_17 | 14224 | 15063 | - | 4.A.6.1.18 |
| TC | MGYG000002742_29 | MGYG000002742_29_18 | 15053 | 15940 | - | 4.A.6.1.18 |
| TC | MGYG000002742_29 | MGYG000002742_29_19 | 16034 | 16498 | - | 4.A.6.1.18 |
| CAZyme | MGYG000002742_29 | MGYG000002742_29_20 | 16501 | 18297 | - | GH35 |
| pfam | MGYG000002742_29 | MGYG000002742_29_21 | 18783 | 19256 | - | DUF386 |
| CAZyme | MGYG000002742_29 | MGYG000002742_29_22 | 19289 | 20458 | - | CE9 |
| TF | MGYG000002742_29 | MGYG000002742_29_23 | 20602 | 21333 | - | GntR |
| TC | MGYG000002742_29 | MGYG000002742_29_24 | 21566 | 22936 | - | 4.A.1.1.7 |
Gene ID: MGYG000002742_29_12
Type: CAZyme
Location: 9516 - 10685 (-)
Type: CAZyme
Location: 9516 - 10685 (-)
Gene ID: MGYG000002742_29_13
Type: STP
Location: 10802 - 11968 (-)
Type: STP
Location: 10802 - 11968 (-)
Gene ID: MGYG000002742_29_14
Type: TF
Location: 12080 - 12814 (-)
Type: TF
Location: 12080 - 12814 (-)
Gene ID: MGYG000002742_29_15
Type: TC
Location: 12902 - 13330 (-)
Type: TC
Location: 12902 - 13330 (-)
Gene ID: MGYG000002742_29_16
Type:
Location: 13412 - 14035 (-)
Type:
Location: 13412 - 14035 (-)
Gene ID: MGYG000002742_29_17
Type: TC
Location: 14224 - 15063 (-)
Type: TC
Location: 14224 - 15063 (-)
Gene ID: MGYG000002742_29_18
Type: TC
Location: 15053 - 15940 (-)
Type: TC
Location: 15053 - 15940 (-)
Gene ID: MGYG000002742_29_19
Type: TC
Location: 16034 - 16498 (-)
Type: TC
Location: 16034 - 16498 (-)
Gene ID: MGYG000002742_29_20
Type: CAZyme
Location: 16501 - 18297 (-)
Type: CAZyme
Location: 16501 - 18297 (-)
Gene ID: MGYG000002742_29_21
Type: pfam
Location: 18783 - 19256 (-)
Type: pfam
Location: 18783 - 19256 (-)
Gene ID: MGYG000002742_29_22
Type: CAZyme
Location: 19289 - 20458 (-)
Type: CAZyme
Location: 19289 - 20458 (-)
Gene ID: MGYG000002742_29_23
Type: TF
Location: 20602 - 21333 (-)
Type: TF
Location: 20602 - 21333 (-)
Gene ID: MGYG000002742_29_24
Type: TC
Location: 21566 - 22936 (-)
Type: TC
Location: 21566 - 22936 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900545665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002742_29_17 | vegetarian > vegan | 2.62139 | 0.02017 |
| MGYG000002742_29_19 | vegetarian > vegan | 3.48998 | 0.02017 |
| MGYG000002742_29_20 | vegetarian > vegan | 2.81868 | 0.02017 |
| MGYG000002742_29_23 | vegetarian > vegan | 3.47106 | 0.02017 |