Cluster: MGYG000002741_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002741
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002741_22 | MGYG000002741_22_8 | 7100 | 7438 | - | 4.A.3.1.2 |
| TF | MGYG000002741_22 | MGYG000002741_22_9 | 7653 | 8657 | - | LacI |
| TC | MGYG000002741_22 | MGYG000002741_22_10 | 9015 | 10790 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002741_22 | MGYG000002741_22_11 | 10857 | 12296 | + | GH1 |
| TF | MGYG000002741_22 | MGYG000002741_22_12 | 12558 | 13595 | - | LacI |
| CAZyme | MGYG000002741_22 | MGYG000002741_22_13 | 13937 | 15379 | + | GH1 |
| TC | MGYG000002741_22 | MGYG000002741_22_14 | 15556 | 17316 | + | 4.A.3.1.1 |
| TF | MGYG000002741_22 | MGYG000002741_22_15 | 17730 | 18740 | - | LacI |
| TC | MGYG000002741_22 | MGYG000002741_22_16 | 19016 | 20794 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002741_22 | MGYG000002741_22_17 | 20871 | 22292 | + | GH1 |
| pfam | MGYG000002741_22 | MGYG000002741_22_18 | 22660 | 23892 | + | Fic |
| STP | MGYG000002741_22 | MGYG000002741_22_19 | 23941 | 24270 | - | DeoRC |
| TC | MGYG000002741_22 | MGYG000002741_22_20 | 24434 | 26128 | - | 4.A.3.1.1 |
Gene ID: MGYG000002741_22_8
Type: TC
Location: 7100 - 7438 (-)
Type: TC
Location: 7100 - 7438 (-)
Gene ID: MGYG000002741_22_9
Type: TF
Location: 7653 - 8657 (-)
Type: TF
Location: 7653 - 8657 (-)
Gene ID: MGYG000002741_22_10
Type: TC
Location: 9015 - 10790 (+)
Type: TC
Location: 9015 - 10790 (+)
Gene ID: MGYG000002741_22_11
Type: CAZyme
Location: 10857 - 12296 (+)
Type: CAZyme
Location: 10857 - 12296 (+)
Gene ID: MGYG000002741_22_12
Type: TF
Location: 12558 - 13595 (-)
Type: TF
Location: 12558 - 13595 (-)
Gene ID: MGYG000002741_22_13
Type: CAZyme
Location: 13937 - 15379 (+)
Type: CAZyme
Location: 13937 - 15379 (+)
Gene ID: MGYG000002741_22_14
Type: TC
Location: 15556 - 17316 (+)
Type: TC
Location: 15556 - 17316 (+)
Gene ID: MGYG000002741_22_15
Type: TF
Location: 17730 - 18740 (-)
Type: TF
Location: 17730 - 18740 (-)
Gene ID: MGYG000002741_22_16
Type: TC
Location: 19016 - 20794 (+)
Type: TC
Location: 19016 - 20794 (+)
Gene ID: MGYG000002741_22_17
Type: CAZyme
Location: 20871 - 22292 (+)
Type: CAZyme
Location: 20871 - 22292 (+)
Gene ID: MGYG000002741_22_18
Type: pfam
Location: 22660 - 23892 (+)
Type: pfam
Location: 22660 - 23892 (+)
Gene ID: MGYG000002741_22_19
Type: STP
Location: 23941 - 24270 (-)
Type: STP
Location: 23941 - 24270 (-)
Gene ID: MGYG000002741_22_20
Type: TC
Location: 24434 - 26128 (-)
Type: TC
Location: 24434 - 26128 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902478965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002741_22_12 | vegetarian > omnivore | 1.05225 | 0.03181 |