Cluster: MGYG000002734_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002734
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002734_6 | MGYG000002734_6_26 | 28878 | 30320 | + | 3.A.1.8.1 |
| TC | MGYG000002734_6 | MGYG000002734_6_27 | 30324 | 31394 | + | 3.A.1.1.3 |
| TC | MGYG000002734_6 | MGYG000002734_6_28 | 31993 | 33603 | + | 3.A.1.5.11 |
| TC | MGYG000002734_6 | MGYG000002734_6_29 | 33692 | 34645 | + | 3.A.1.5.39 |
| TC | MGYG000002734_6 | MGYG000002734_6_30 | 34642 | 35472 | + | 3.A.1.5.39 |
| TC | MGYG000002734_6 | MGYG000002734_6_31 | 35476 | 36471 | + | 3.A.1.5.37 |
| TC | MGYG000002734_6 | MGYG000002734_6_32 | 36461 | 37246 | + | 3.A.1.5.36 |
| pfam | MGYG000002734_6 | MGYG000002734_6_33 | 37323 | 38486 | + | HGD-D |
| pfam | MGYG000002734_6 | MGYG000002734_6_34 | 38642 | 39406 | + | BcrAD_BadFG |
| CAZyme | MGYG000002734_6 | MGYG000002734_6_35 | 39421 | 40638 | + | GT4 |
Gene ID: MGYG000002734_6_26
Type: TC
Location: 28878 - 30320 (+)
Type: TC
Location: 28878 - 30320 (+)
Gene ID: MGYG000002734_6_27
Type: TC
Location: 30324 - 31394 (+)
Type: TC
Location: 30324 - 31394 (+)
Gene ID: MGYG000002734_6_28
Type: TC
Location: 31993 - 33603 (+)
Type: TC
Location: 31993 - 33603 (+)
Gene ID: MGYG000002734_6_29
Type: TC
Location: 33692 - 34645 (+)
Type: TC
Location: 33692 - 34645 (+)
Gene ID: MGYG000002734_6_30
Type: TC
Location: 34642 - 35472 (+)
Type: TC
Location: 34642 - 35472 (+)
Gene ID: MGYG000002734_6_31
Type: TC
Location: 35476 - 36471 (+)
Type: TC
Location: 35476 - 36471 (+)
Gene ID: MGYG000002734_6_32
Type: TC
Location: 36461 - 37246 (+)
Type: TC
Location: 36461 - 37246 (+)
Gene ID: MGYG000002734_6_33
Type: pfam
Location: 37323 - 38486 (+)
Type: pfam
Location: 37323 - 38486 (+)
Gene ID: MGYG000002734_6_34
Type: pfam
Location: 38642 - 39406 (+)
Type: pfam
Location: 38642 - 39406 (+)
Gene ID: MGYG000002734_6_35
Type: CAZyme
Location: 39421 - 40638 (+)
Type: CAZyme
Location: 39421 - 40638 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900545165
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002734_6_28 | vegan > omnivore | 3.43418 | 0.01061 |
| MGYG000002734_6_28 | vegetarian > omnivore | 1.01730 | 0.04449 |
| MGYG000002734_6_29 | vegan > omnivore | 2.86551 | 0.01061 |
| MGYG000002734_6_29 | vegetarian > omnivore | 1.15199 | 0.04449 |
| MGYG000002734_6_30 | vegan > omnivore | 3.10680 | 0.01061 |
| MGYG000002734_6_30 | vegetarian > omnivore | 1.19985 | 0.04449 |
| MGYG000002734_6_32 | vegan > omnivore | 2.96283 | 0.01061 |
| MGYG000002734_6_32 | vegetarian > omnivore | 1.04923 | 0.04449 |
| MGYG000002734_6_35 | vegan > omnivore | 1.71733 | 0.01061 |