Cluster: MGYG000002733_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: MGYG000002733
- CGC Family ID: CGCFAM_00243
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002733_1 | MGYG000002733_1_80 | 80323 | 81810 | + | 4.A.1.1.7 |
| TF | MGYG000002733_1 | MGYG000002733_1_81 | 82043 | 82774 | + | GntR |
| CAZyme | MGYG000002733_1 | MGYG000002733_1_82 | 82918 | 84087 | + | CE9 |
| pfam | MGYG000002733_1 | MGYG000002733_1_83 | 84120 | 84593 | + | DUF386 |
| pfam | MGYG000002733_1 | MGYG000002733_1_84 | 85063 | 85296 | + | PTSIIB_sorb |
| CAZyme | MGYG000002733_1 | MGYG000002733_1_85 | 85711 | 87507 | + | GH35 |
| TC | MGYG000002733_1 | MGYG000002733_1_86 | 87510 | 87974 | + | 4.A.6.1.18 |
| TC | MGYG000002733_1 | MGYG000002733_1_87 | 88068 | 88952 | + | 4.A.6.1.18 |
| TC | MGYG000002733_1 | MGYG000002733_1_88 | 88942 | 89781 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000002733_1 | MGYG000002733_1_89 | 89970 | 90593 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002733_1 | MGYG000002733_1_90 | 90675 | 91103 | + | 4.A.6.1.8 |
| TF | MGYG000002733_1 | MGYG000002733_1_91 | 91191 | 91925 | + | GntR |
| STP | MGYG000002733_1 | MGYG000002733_1_92 | 92037 | 93203 | + | SIS | SIS |
| CAZyme | MGYG000002733_1 | MGYG000002733_1_93 | 93319 | 94488 | + | CE9 |
Gene ID: MGYG000002733_1_80
Type: TC
Location: 80323 - 81810 (+)
Type: TC
Location: 80323 - 81810 (+)
Gene ID: MGYG000002733_1_81
Type: TF
Location: 82043 - 82774 (+)
Type: TF
Location: 82043 - 82774 (+)
Gene ID: MGYG000002733_1_82
Type: CAZyme
Location: 82918 - 84087 (+)
Type: CAZyme
Location: 82918 - 84087 (+)
Gene ID: MGYG000002733_1_83
Type: pfam
Location: 84120 - 84593 (+)
Type: pfam
Location: 84120 - 84593 (+)
Gene ID: MGYG000002733_1_84
Type: pfam
Location: 85063 - 85296 (+)
Type: pfam
Location: 85063 - 85296 (+)
Gene ID: MGYG000002733_1_85
Type: CAZyme
Location: 85711 - 87507 (+)
Type: CAZyme
Location: 85711 - 87507 (+)
Gene ID: MGYG000002733_1_86
Type: TC
Location: 87510 - 87974 (+)
Type: TC
Location: 87510 - 87974 (+)
Gene ID: MGYG000002733_1_87
Type: TC
Location: 88068 - 88952 (+)
Type: TC
Location: 88068 - 88952 (+)
Gene ID: MGYG000002733_1_88
Type: TC
Location: 88942 - 89781 (+)
Type: TC
Location: 88942 - 89781 (+)
Gene ID: MGYG000002733_1_89
Type:
Location: 89970 - 90593 (+)
Type:
Location: 89970 - 90593 (+)
Gene ID: MGYG000002733_1_90
Type: TC
Location: 90675 - 91103 (+)
Type: TC
Location: 90675 - 91103 (+)
Gene ID: MGYG000002733_1_91
Type: TF
Location: 91191 - 91925 (+)
Type: TF
Location: 91191 - 91925 (+)
Gene ID: MGYG000002733_1_92
Type: STP
Location: 92037 - 93203 (+)
Type: STP
Location: 92037 - 93203 (+)
Gene ID: MGYG000002733_1_93
Type: CAZyme
Location: 93319 - 94488 (+)
Type: CAZyme
Location: 93319 - 94488 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002733_1_81 | vegetarian > vegan | 3.14443 | 0.01711 |
| MGYG000002733_1_82 | vegetarian > vegan | 1.27120 | 0.01711 |
| MGYG000002733_1_85 | vegetarian > vegan | 2.71080 | 0.01711 |
| MGYG000002733_1_86 | vegetarian > vegan | 3.32274 | 0.01711 |
| MGYG000002733_1_87 | vegetarian > vegan | 2.45193 | 0.03165 |
| MGYG000002733_1_88 | vegetarian > vegan | 2.44210 | 0.01711 |