Cluster: MGYG000002634_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002634
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002634_9 | MGYG000002634_9_18 | 16265 | 17392 | + | GH102 |
| pfam | MGYG000002634_9 | MGYG000002634_9_19 | 17392 | 18153 | + | ThiF |
| TC | MGYG000002634_9 | MGYG000002634_9_20 | 18321 | 19301 | + | 3.A.1.15.5 |
| pfam | MGYG000002634_9 | MGYG000002634_9_21 | 19420 | 21555 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | MGYG000002634_9 | MGYG000002634_9_22 | 21591 | 23495 | - | 2.A.37.1.2 |
Gene ID: MGYG000002634_9_18
Type: CAZyme
Location: 16265 - 17392 (+)
Type: CAZyme
Location: 16265 - 17392 (+)
Gene ID: MGYG000002634_9_19
Type: pfam
Location: 17392 - 18153 (+)
Type: pfam
Location: 17392 - 18153 (+)
Gene ID: MGYG000002634_9_20
Type: TC
Location: 18321 - 19301 (+)
Type: TC
Location: 18321 - 19301 (+)
Gene ID: MGYG000002634_9_21
Type: pfam
Location: 19420 - 21555 (+)
Type: pfam
Location: 19420 - 21555 (+)
Gene ID: MGYG000002634_9_22
Type: TC
Location: 21591 - 23495 (-)
Type: TC
Location: 21591 - 23495 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002634_9_19 | vegan > omnivore | 1.47648 | 0.00918 |
| MGYG000002634_9_19 | vegetarian > omnivore | 1.44090 | 0.01788 |
| MGYG000002634_9_21 | vegan > omnivore | 1.40394 | 0.00918 |
| MGYG000002634_9_21 | vegetarian > omnivore | 1.33608 | 0.01788 |